Flavobacterium sediminis: DI487_09885
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Entry
DI487_09885 CDS
T06625
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fse
Flavobacterium sediminis
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fse03016
]
DI487_09885
Enzymes [BR:
fse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DI487_09885
Transfer RNA biogenesis [BR:
fse03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DI487_09885
Prokaryotic type
tRNA splicing ligases
DI487_09885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWM15320
UniProt:
A0A2U8QYM3
LinkDB
All DBs
Position
complement(2126792..2128213)
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AA seq
473 aa
AA seq
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MNTAINGNDLLALGYAEGSLIGIALKCNRKRTGFTKEQMLENYEKVLAQPDDFLDHALFG
ALAQAIIEKANEKPEDYIALNENPSSFVMYGEDHIEEGARKQMEIAMQLPVTIAGALMPD
AHQGYGLPIGGVLATKNAVIPYGVGVDIGCRMALSVYDIPEFFYFENEAKFKRELVAHTK
FGAGHGFHGQYKADHEVLERKDFANSKFIQELKDKAWSQLGSSGGGNHFVEFGIIEFEKE
DTVLNIPKGKYVALLTHSGSRGFGATIAGHYTKLAKANCKLPEKAKNLAYLGLDTELGQE
YWMAMNLAGDYASACHEVIHNKIAKALGATVLAKVENHHNFAWKEIHNGEEVIVHRKGAT
PAAEGVMGIIPGSMTAPGFLVRGKGETEALHSASHGAGRQMSRTQAIKNITRNEMKAILK
DHGVTLIGAGLDEAPMAYKDINQVMANQEALVEVVATFTPKMVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcaatcaacggaaacgatttattagcattaggatatgcagaaggaagttta
ataggaatcgctttaaaatgcaaccgtaagagaaccggttttaccaaagaacaaatgttg
gagaactatgaaaaggttttggcgcaaccggatgattttttagatcatgcattatttgga
gctttagcgcaagccattattgaaaaagctaatgaaaaaccggaagattatattgcatta
aatgaaaatccatcatcttttgtgatgtatggtgaagaccatattgaagaaggagcaaga
aaacaaatggaaatagccatgcaattaccggttaccattgccggagctttaatgcccgat
gcgcatcaaggctatggattgccaataggcggtgttttagccactaaaaatgcggtcatt
ccttatggagttggggtagatatcgggtgtagaatggcgttgtcggtgtatgatattccg
gagttcttttatttcgagaacgaagccaaattcaaaagagaattggtcgcacatactaaa
ttcggagccggacatggatttcacggacaatacaaagccgatcatgaggtattggaacgt
aaagactttgcgaacagcaaattcatacaagagttaaaagacaaagcctggtcgcaattg
ggaagttccggtggcggaaatcactttgtagagtttggcatcattgaatttgaaaaagaa
gataccgtgttaaacatcccgaaaggaaaatatgtcgctttgttgacacactcgggttcc
agaggttttggtgctacaattgccggacattataccaaattggccaaagcaaactgtaaa
cttccggaaaaggcaaaaaacttagcctatttaggtttggataccgaattaggtcaggaa
tattggatggctatgaacttagcaggcgattatgcctcggcttgtcatgaagtgattcat
aacaaaatagccaaagcgttaggagcaaccgttttagccaaagtagagaaccaccataac
tttgcgtggaaagagatccataacggcgaagaagtgatcgtacaccgaaaaggagcaaca
ccagccgcagaaggtgtgatgggaatcattccgggaagtatgaccgctccgggatttttg
gttcgtggaaaaggggaaaccgaagccttacattccgcatcacatggtgcaggaagacaa
atgagcagaacacaagccattaagaacattacccgaaatgagatgaaagccattttaaaa
gatcatggcgtaactttaattggtgccggactggacgaagcgcctatggcgtataaagac
atcaaccaagtgatggcaaaccaagaagctttagtagaggtagtcgctacatttacgcct
aaaatggtgcgaatggcagatgatggtagtagagaggattaa
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