Flavobacterium sediminis: DI487_13475
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Entry
DI487_13475 CDS
T06625
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fse
Flavobacterium sediminis
Pathway
fse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DI487_13475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fse03021
]
DI487_13475
03019 Messenger RNA biogenesis [BR:
fse03019
]
DI487_13475
Transcription machinery [BR:
fse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DI487_13475
Messenger RNA biogenesis [BR:
fse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DI487_13475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
NACHT
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
AWM14763
UniProt:
A0A2U8QXA0
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All DBs
Position
2904249..2905940
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AA seq
563 aa
AA seq
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MFDIEVLKEMKLSDLQEIAKVANVKKYRSLKKEDLIYQILDMQAANPEKVKAEETSPVVK
EDKAVPKPKRTRIVKKAKTSEGTEVVDEAKNPLLEEKEAKEVAEESKPVAKQTTRRAKTE
VKDQSVNKEAVVVKEEEVKTEQHQASSVQKVPNSKANANNPNNPNYKKSSHHNSEKGANN
PKQPNYREPDYEFDGIIESEGVLEMMPDGYGFLRSSDYNYLSSPDDIYLSQSQIRLFGLK
TGDTVKGVVRPPKEGEKYFPLVKVLKINGHDPQVVRDRISFEHLTPVFPKEKFRLAERSS
TISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDVANAIAANHPEVYMIVLLIDERPEE
VTDMQRSVKAEVVASTFDREPQEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYN
TVQPASGKVLSGGVDANALQKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEF
KGTGNMELQLDRRIANKRIFPAIDLVSSSTRRDDLLLDENTVQRMWIMRKYLADMNPVEA
MDFIYDRFKKTQNNEEFLISMNE
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatattgaagtattaaaggagatgaaactctctgacttgcaagaaattgccaaa
gttgctaatgtaaaaaaatatcgttctttaaaaaaagaagatttaatctatcaaattcta
gatatgcaagcagctaatcctgaaaaggtaaaagcagaggaaacttctccggtagtaaaa
gaagataaagcagttcctaagcctaaaaggactagaattgttaaaaaggctaagacctcg
gagggtactgaagtggttgatgaggctaagaatcctttattggaagaaaaggaagctaaa
gaagtagctgaagaatcaaaacctgtagcaaaacagacaaccagacgcgctaagactgaa
gtaaaggatcagagtgtaaataaggaagctgttgttgtaaaggaagaggaagttaagaca
gaacaacatcaagcttcttcggttcaaaaagtgccaaacagtaaagcaaatgctaataat
ccgaataatcccaactataagaaaagtagtcatcacaatagtgagaaaggagcaaataat
ccaaagcagccgaattatagagagccggattatgaatttgacggaattatagagagtgaa
ggtgttctggaaatgatgccggatggttatggttttttgcgctcttcagattataattac
ctttcttctccagatgatatttatttgtcacaatctcaaataagattgtttggtcttaaa
acaggtgataccgtaaaaggagttgtaagacctccaaaagaaggtgaaaagtattttcct
ttggtaaaagtattaaaaattaacggccacgatccgcaagtggtacgcgatagaatttcg
tttgaacatttaactccggtttttcctaaagaaaaattcagacttgctgaacgtagcagt
actatttccacacgaattattgatttattttctccgatcggtaaaggccaaagaggtatg
atcgttgcacagcctaaaaccggtaaaacgatgttgctgaaagatgttgctaatgctatt
gcggcgaatcatcctgaagtatatatgatcgtacttttaattgacgaaagaccggaagag
gtaactgacatgcaacgtagtgttaaagcagaagtagtagcttctacatttgacagagaa
cctcaggagcatgttaagattgccaatattgttttagagaaagccaaacgtttggttgag
tgtggtcatgatgtggttatcttattagattcaattacacgtttggcaagagcttataac
acggtacaaccggcttcaggaaaagtattgagtggtggggtggatgccaatgccttacag
aaacctaaacgtttctttggtgcagcccgaaatgtagaaaacggaggatcgttgagtatc
attgcaacagcgcttacagaaaccggttctaaaatggatgaagtgatctttgaagagttt
aaaggaacaggtaatatggaattacaattagatagaagaattgctaataaacgtattttc
cctgcaatagacttggtttcttcaagtacacgtcgtgatgatctgttattagatgaaaat
actgtccaaagaatgtggatcatgcgtaagtatttagccgatatgaatcctgtagaagcg
atggacttcatttatgatcgtttcaagaagacacagaataatgaagaatttttgatttct
atgaatgaatag
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