Flavobacterium soyae: AABD74_00750
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Entry
AABD74_00750 CDS
T10840
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsf Flavobacterium soyae
Pathway
fsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AABD74_00750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsf03019
]
AABD74_00750
03400 DNA repair and recombination proteins [BR:
fsf03400
]
AABD74_00750
Enzymes [BR:
fsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AABD74_00750
Messenger RNA biogenesis [BR:
fsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AABD74_00750
DNA repair and recombination proteins [BR:
fsf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AABD74_00750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
DUF1949
HTH_69
NirdL-like_HTH
HTH_9
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WYZ20003
LinkDB
All DBs
Position
158085..159980
Genome browser
AA seq
631 aa
AA seq
DB search
MQDAQEILLKYWKHQSFRPLQKEIIDSVLEGQDTFALLPTGGGKSICFQVPAMMQDGICL
VVSPLIALMKDQVANLQKRDIKAIALTGGIHTEEIIDLLDNCQFGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKYFPKIPFLALTATATPRVV
EDIKTELGLKDPKLFQQSFERKNIAYMVFEVEDKLYRVEQILKKNPQPSIIYVRNRKSCL
NMSTQLQSLGFRATYYHGGLSAQEKDKNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENLENYYQESGRAGRNGEKAFSVLLFNNSDANQTEQQFISVLPDKKFLKTMFIKLC
NYFQIAYGEGLDDSYSFKMNHFCHKYDFPTLKTYNALQFLNQQGIITMSQEFSEKVTMQF
LIESKEVLRYMSLNPNDEEIILTILRTYPGIHEMKTPLNLSLIAKKSNHTEEQVTALLEK
LKEKDIIEYKSKNNDATILFNEVREDDLTINRVSKYLEKQNKLKRDQLSSVLYYIKEDKT
CKNRLVLDYFGEETKSNCGVCSFCITQKGKITEADAIADKILHLLKATALTSREIQNQIK
LDAKDVILVLQELLENNHIIILANNKYTLKS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgcacaggaaattcttttaaaatactggaaacaccaaagtttccgaccgttg
caaaaagaaattattgattcggttttagaagggcaagacacttttgcactgctgccaacc
ggaggcggaaaatcgatttgttttcaggttccggcgatgatgcaagacggaatttgtctg
gtagtttctcctttaattgccttgatgaaagatcaggtagcgaatttgcagaaaagagat
attaaagcaattgctcttacaggcggaattcatacggaagaaattatcgatcttttagac
aattgccaattcggaaattataaattcctttacctttcgccagagcgtttacagtctgac
tggattttagaacgaatcaaaaatcttcctataaatttaatcgctattgatgaggcacat
tgtgtttcccaatggggtcacgatttcagacctgcttatttaaaaatttctgaacttaaa
aaatactttcctaaaattccttttttggctttaaccgcaactgcgactccacgagttgtt
gaagacattaaaaccgaattggggttaaaagacccaaaactttttcaacagtcttttgaa
agaaagaatattgcctacatggtttttgaagtcgaagacaaattgtatcgtgtcgaacag
attttgaagaaaaatccacagccatctattatatatgtgcgaaacagaaaatcatgcctg
aatatgtcaactcaattgcaatcgctaggatttagggcaacgtattatcatggcggactt
tcggctcaggaaaaagataaaaacatgcagctatggatgtcagaacaagcacaggttatt
gttgccaccaatgcgtttggaatgggaattgacaaagacaacgttaaaactgttattcat
acgcaactgcctgaaaacttagaaaattattatcaggaatctggaagagcaggacgaaat
ggcgaaaaagcattttctgttttattgtttaataattcagatgcaaaccaaactgaacag
caatttataagcgtccttcctgataaaaagttcttaaagacgatgtttattaaattgtgt
aattattttcaaattgcttacggcgaaggtttagacgattcgtattcttttaaaatgaat
catttttgccataaatacgacttccctactttaaaaacttataatgctttgcagttttta
aaccagcagggaatcattacaatgtctcaggaattttcagaaaaagttacaatgcagttt
ttaatcgaatcaaaagaagtacttcgatatatgagtctgaatccgaatgatgaagaaatt
attctgacaattttaagaacatatcctggaattcatgaaatgaaaacaccgcttaatctt
tcgctgattgcaaaaaaatcaaatcatactgaagaacaggttacggcacttttagaaaaa
ttgaaagagaaagacattatagaatataaatctaaaaataacgacgctactattttattt
aatgaagtacgtgaggatgatttaacaataaaccgggtttctaaatatctggaaaagcaa
aataaactaaaacgagatcagctttcgtcggtactatattatataaaggaagacaaaacc
tgtaaaaacagattggttttggattattttggagaagaaaccaaatcgaattgcggcgtt
tgttctttctgcatcactcaaaaaggaaaaatcactgaagcagacgctattgctgataaa
attcttcacttattaaaagcaactgccttaacttcgcgcgaaattcaaaatcagataaaa
ttagatgctaaagatgttattctggttcttcaggaattactggaaaacaatcatatcatt
attttagccaataataaatacactttaaaatcataa
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