Flavobacterium soyae: AABD74_09480
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Entry
AABD74_09480 CDS
T10840
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsf Flavobacterium soyae
Pathway
fsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AABD74_09480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsf03019
]
AABD74_09480
03400 DNA repair and recombination proteins [BR:
fsf03400
]
AABD74_09480
Enzymes [BR:
fsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AABD74_09480
Messenger RNA biogenesis [BR:
fsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AABD74_09480
DNA repair and recombination proteins [BR:
fsf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AABD74_09480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrD-helicase
Helicase_C
AAA_19
UvrD_C
Viral_helicase1
UvrD_C_2
AAA_30
AAA_22
PhoH
AAA_12
AAA_16
FtsK_SpoIIIE
Mnd1
Motif
Other DBs
NCBI-ProteinID:
WYZ21683
LinkDB
All DBs
Position
complement(2178235..2183085)
Genome browser
AA seq
1616 aa
AA seq
DB search
MLIDEQNNTRLITFIDTEIEPSKGKILDIGAIKENGNQFHKASLGDFVQFLKGDDYVCGH
NILNHDIKYIGKAIYDAGINSSNIIDTLHLSPLLFPTKPYHALLKDDKLQTEDTNNPLND
SIKARDLFNSEIAAFWQIDKTLKEIFYLLLSEKKEFGAFFRLVKYKNINPDAEVQIRLKF
RSEICEHSDLTKIIAENPIELAYCLSLINSFIIHRKVHSITPPWVLKNYPEVERIMLLLR
SKPCITGCIYCNNALDIYKGLKKFFGFDAYRTYGGEPLQEKAVKAAVNNKSVLAVFPTGG
GKSITFQVPALMSAENSKGLTIVISPLQSLMKDQVDNLEKNGITEAVTINGLLDPIERAK
SFERIEDGSASILYISPESIRSKTIEKLILGRKVARFVIDEAHCFSSWGQDFRVDYLYIG
DFIKLIQEKKNLEDCIPVSCFTATAKQKVIEDIRDYFREKLSLDLEVFTSKASRSNLQYK
VFEKQNEDEKYLTTRDLIEEKNCPTIIYVSRTLKAYKLAEQLAKDGFNAKPYHGKMDKKE
KTENQDSFLNGKTQIMVATSAFGMGVDKKDVGLVIHYEISDSLENYVQEAGRAGRDENIS
ADCFVLFNEEDLSKHFILLNQTKLSIKEIQQVWKAIKDITRFRSKVSNSALEIARKAGWD
DNVVEIETRVTTAIAALEDAGYLKRGQNMPRVFANSILSKNTQEAIDKINTSGRFEEKQK
EQGVRIIKKLFSSKSRKQTNNETPESRVDYISDHLGIIKEEVINVINLLREENILADAKD
LTAFIKNTDNKNRSLAIVESYSKIENFLLSVFKEEESIFHLKELNENAEKDSCDGVNTNK
LKTIINFWSIKNWIKRKNLDHSKNHIAVLCLQTKEQLKDKLEKRHELAAFIVNFFYDKTI
TEAIKGQADKEEILVEFSVHELKTVYDNSFSLFKREISINDIEDTLFYLSRIEAIKIEGG
FLVVYNSLTIERTEQDNKKRYTKDDYQKLNQFYESKVQQIHIVGEYAQRMIMDYKNALQF
VEDYFHLNYSSFLNKYFNGSDRQNEIKRNITPAKFRQLFGELSPTQLKIIKDNETQHIVV
AAGPGSGKTKVLVHKLASLLLMEDVKHEQLLMLTFSRAAAIEFKKRLLKLIGNAANFIEI
KTFHSYCFDLLGKVGTLEKSTDILNTTVERIKNGDVEANKITKTVLVIDEAQDMNADEFA
LINALMNQNEEMRVIAVGDDDQNIYEFRGASSKYLEQFIYDNNAVKHELVENYRSKSNLV
AFSNQFVQQIQHRLKETPIIANQTDNGKIKVVRYQSSNLITPLVTDIVNADLSGTTCVLT
KTNEEAVKVAGFLLKAGINAKLIQSNDDFSLYNLIEVRFLIDKVNVGADIYTISDEVWDN
AKKELINTFCNSNKLEICQNIIKDFETTNPNRKYKSDLEVLIRESKLEDFYNENGETIFV
STIHKAKGREFDNVFLLLENFNTAADEAKRQLYVAMTRAKRNLNVHLNANYLNHLAAENL
EQINDFEVYTIPDKIAIHATFKDIWLDYFINRQILVSGLTCGEMLHVVGYECLNSSGQSV
LKFSKLFIEKIEIMKSRHYELKSAKVNFILYWLKEGASQEIKIILPELYFEIIEHK
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atgctaatagatgaacaaaataatacccgtttaattacatttattgacaccgaaattgaa
ccatcaaaaggcaaaatccttgatataggtgcaattaaagaaaacggtaatcaattccat
aaagcatctttaggagattttgtccagttcctcaaaggtgacgattatgtatgcgggcac
aacattttaaatcacgatataaaatatataggtaaagcaatttatgatgctggtattaat
tcttctaacataattgatactttacatttatctcctttgttatttccaactaagccttac
catgccttattaaaagatgataaacttcagacggaagacacaaacaatccgttaaacgat
tctattaaagcacgagatttattcaatagtgaaatcgctgctttttggcagattgataaa
acacttaaagaaattttttatctcctcttaagtgagaaaaaagagtttggagcttttttt
cggttagtaaaatacaagaatataaaccctgatgcagaagtacagattagattaaaattc
cgcagtgagatttgtgaacactcagatttaaccaaaataatagctgaaaatcctatcgaa
ttggcgtattgcctgtcactgattaattcatttataatccatagaaaggttcattccatt
acgcccccatgggttcttaaaaactaccccgaagtagaacgtataatgttattattacgg
agtaaaccttgtataaccggctgtatttattgcaacaacgcgcttgatatctacaaagga
ttaaaaaaattctttggctttgatgcttaccgaacttatggtggtgaaccgcttcaggaa
aaagccgttaaggccgccgttaacaataagtcggtactggcagttttcccaactggcggc
ggaaaatcaataacatttcaggttccggcacttatgagtgctgaaaactctaaaggatta
accatcgtaatttctccgcttcagtcgttaatgaaagatcaggtcgacaaccttgaaaaa
aatggaataacagaagctgttactattaatggacttttagatcctattgaaagagccaaa
tcatttgaaagaattgaagatggctctgcctctattttgtatatttcacctgagtctata
cgttcaaagactatcgaaaagctaattttaggccggaaagttgcacgttttgtgattgat
gaagcacactgcttttcatcatggggacaagatttcagggtcgactatttatatattggt
gattttataaagttaattcaggaaaagaaaaaccttgaagactgcatacctgtatcctgc
tttaccgcaacagccaaacaaaaagtaattgaagatatccgggattattttcgtgaaaaa
ctatcgctggatcttgaagtattcacttcaaaagcgtcaaggtctaatcttcagtataag
gtttttgaaaagcaaaatgaagatgaaaaatatttgaccaccagagatttaatagaggag
aaaaactgtcctacaattatctatgtatccagaacactcaaagcgtataaacttgccgag
cagctggcaaaagacggttttaatgcaaaaccataccatggcaaaatggataaaaaggag
aagaccgagaatcaggattcctttttaaatggcaaaacacaaattatggtggccacttcc
gcatttggtatgggagtagacaagaaagatgtaggcttggttattcattatgaaatttca
gattcacttgaaaactatgtgcaggaagctgggcgtgctggcagggatgaaaatatttcg
gctgattgttttgtgctgtttaacgaagaagacctcagcaagcactttattctgctgaac
cagaccaaactttccattaaggaaatccagcaggtatggaaagcgataaaggatattaca
agatttcgttctaaagtatctaattccgcgttagaaatcgcccgtaaggcaggttgggac
gataatgttgtagaaatagaaacgcgtgtaactaccgcaattgctgcccttgaagatgcg
gggtatttaaaacgcggacagaatatgcctagggtgtttgctaatagtattttatctaaa
aatacccaagaagccatcgataaaataaacacttcgggaagatttgaagaaaagcaaaaa
gaacaaggtgtacgtatcataaagaagctgttttcaagtaaaagcagaaagcagaccaac
aacgaaactccagaatcaagggtagactatattagcgatcatttgggtattataaaggaa
gaagtcattaatgtaataaacttgctgcgtgaagaaaatattctggcagatgccaaggat
ttgactgcatttataaagaatacagataataaaaaccgctctcttgccatagtagagtca
tacagcaaaattgaaaactttttactctcagttttcaaagaagaagaaagtatttttcat
ttgaaagaattaaacgagaatgcagaaaaagatagctgtgatggtgtaaacaccaataaa
ctaaaaacgataattaacttttggtctattaaaaactggattaaaagaaagaacttagac
cattctaaaaaccatattgccgtactctgtcttcaaactaaagaacaattaaaagataaa
cttgaaaaacgccatgagttagcagcatttatcgttaattttttttatgataaaacaatc
accgaagcgataaaaggccaggcagataaagaggagattttggtggagttttcagtacat
gaactaaagacggtttatgataatagcttcagcctattcaaaagagaaataagcatcaac
gacattgaagatacattattctatctttcgcgaattgaggcaataaagatagaaggtggt
tttcttgtagtttataacagcttaacgattgagcgaacagaacaagataataaaaaaaga
tatactaaagacgattatcaaaagctaaaccagttttacgaaagcaaagtccaacaaatc
cacattgtgggcgaatatgcccaaagaatgattatggattataagaatgcacttcagttt
gtagaagattatttccaccttaattacagctctttcttaaacaaatattttaatggcagt
gatagacagaatgaaattaaacggaatattacccctgcaaaattcagacagttatttggg
gaactttcacctacacaattaaaaattataaaagataacgaaacacaacacatagttgtt
gctgctggtcccggcagtggaaaaacaaaggtattagtccataaactggcttcactcttg
ttaatggaagatgttaagcatgagcagctactaatgctgacattttcacgagctgctgct
atcgaatttaaaaaacgtttattaaaactaattggtaatgcagcaaactttattgaaatt
aaaacatttcattcttactgttttgatcttttgggtaaggtgggtactttagaaaaatcg
acggatattttaaacactacggttgaaagaattaaaaacggtgatgttgaggctaataaa
attacaaagactgttttagtaattgacgaagctcaggatatgaatgcagatgaattcgcc
cttataaacgcattgatgaatcaaaatgaagaaatgagggttattgctgtgggagatgat
gaccaaaatatttatgagtttagaggagcaagttctaaatatctggaacagtttatttat
gataacaacgccgtaaaacatgagttagtcgaaaattaccgcagtaaaagtaatctggtt
gcattttcgaatcaatttgtccaacaaatccaacaccgtctaaaagaaacacccatcatt
gctaatcaaaccgacaatggaaaaatcaaggttgttaggtatcaaagcagcaatctgatt
acacctcttgtaactgatatagttaacgcagatctttccggaactacgtgcgtactcaca
aaaactaacgaagaggctgtaaaagttgctgggtttcttttaaaggctggcataaacgca
aaactaatacaatctaatgatgattttagtttatataatcttattgaagttcgattttta
atcgataaagtaaatgttggagctgatatttacacaatcagtgatgaagtttgggacaat
gctaaaaaagaactaattaacaccttctgtaacagcaacaaattagagatttgccagaac
atcatcaaagattttgaaaccactaatcctaatagaaagtacaaatccgatttagaagtt
ttaatccgggaatctaaattggaggatttttataatgaaaatggcgaaacaatttttgtg
tcaaccattcataaagccaaaggaagagagtttgataatgtctttcttttacttgagaat
tttaatactgctgctgatgaagccaagcgacaattatatgtagcgatgaccagagctaaa
cgtaatctaaatgtccacctaaatgcaaactatctcaatcatttggctgcagaaaatctt
gaacaaataaatgattttgaagtttacactatacctgataaaattgcgatacatgccact
ttcaaagatatttggttagactattttattaacagacagattttagtttctggacttacg
tgtggagaaatgctacatgttgtgggttatgaatgcttaaattcaagcggacaatctgta
ttgaaattctcaaaactattcattgagaaaattgaaataatgaagtcgagacattatgaa
ttaaaaagtgcaaaggtgaattttatactgtattggcttaaagaaggagcatcgcaggaa
atcaaaataatcttgcctgagctttattttgaaattattgagcataagtaa
DBGET
integrated database retrieval system
