Flavobacterium soyae: AABD74_09990
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Entry
AABD74_09990 CDS
T10840
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fsf Flavobacterium soyae
Pathway
fsf03020
RNA polymerase
Brite
Enzymes [BR:
fsf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AABD74_09990 (rpoC)
Transcription machinery [BR:
fsf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AABD74_09990 (rpoC)
DNA repair and recombination proteins [BR:
fsf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AABD74_09990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WYZ21778
LinkDB
All DBs
Position
2303806..2308113
Genome browser
AA seq
1435 aa
AA seq
DB search
MMNNRNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCERI
FGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLP
NKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQRLDFLTEEEYLNILDTLPQE
NQYLDDLDPNKFVAKMGAECIMDLLARIDLDALSYELRHSANNETSKQRKTEALKRLQVV
ESFRESNENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLK
RLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQ
NLLGKRVDYSARSVIVVGPELKLFECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKKI
IDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNAD
FDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIST
EDHIILGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNDAGELVYKIIQTTAGRVLF
NEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSL
GDIRIPEQKTKLIADAREQVEGISTNYNMGLITNNERYNQVIDVWTSANAQLTELAMKNI
REDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEG
LSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVAALK
KNEEIVESLGERILGRVALQDVINPLTNEVMVKSGEQITESIMRTIEASPIEKVEVRSPL
TCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISE
ESSIVTRFNGRLEIEDLKTVKGEDSEGNAVDIVVSRSTELKLVDEKTGIVLNTHNIPYGS
SIFVKDGETVAKGTVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKVI
SEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGDI
TGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEVKKYLVKLSSQ
ILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFEV
VIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVQNDKLYGMKVVEDAGDSSVLKPGQIISP
RELRDENSLLKRNDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNE
AAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataacagaaacaataaagataagaatccagtaaaaagatttaacaaaatttct
attggattggcttcgccagaatctatcctaaaagaatcaagaggagaggttttaaagccg
gaaacaattaactatagaactcacaaaccagagcgtgacggacttttctgcgaaagaatc
tttggaccagtaaaagatttcgaatgtgcttgtggtaagtataaaagaattcgttacaaa
ggtatcatctgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtcgtgacaga
gtaggacacatcaaccttgttgtgccaattgctcatatctggtacttccgttctcttcca
aacaaaattggttatatccttggtcttccatctaagaaattagatatgatcatttactac
gaaagatacgtagtaatccaggctggtattgctaaaaatgcagatggagaatctttacaa
agactagatttcttaactgaagaagaatacttaaatattttagatactcttccgcaggaa
aaccaatatttagatgatttagatccaaataaatttgttgccaaaatgggagcagagtgt
attatggatttattggctcgtattgatttagatgctttatcttatgaattaagacacagt
gctaacaacgaaacatctaaacaacgtaaaactgaagctttaaaaagattacaagttgtt
gagtctttccgtgagtctaacgaaaaccgcgaaaaccgtccagaatggatgattatgaaa
gtggttccagttatcccaccagaattacgtccgcttgtgccgcttgatggaggtcgtttt
gcaacttcagatttaaatgacttataccgtcgtgtaatcatccgtaacaaccgtttgaaa
agattaatggagattaaagctccagaagttatcttaagaaacgagaaacgtatgttacaa
gaatctgtagattcattatttgataacacccgtaaagcttctgctgttaaaacagaatct
aacagaccattaaaatcattatctgactcattaaaaggtaagcaaggacgtttccgtcaa
aacttacttggtaagcgtgtggattattctgctcgttcggtaattgttgttggtcctgag
ttgaaattattcgaatgcggattaccaaaagatatggcatctgagttatacaaacctttc
gttatccgtaaattgattgaaagaggtattgtaaaaacagtaaaatctgctaagaaaatc
atagacaaaaaagagccggtagtttgggatattttagaaaatgtaattaaaggacaccca
gtattactgaaccgtgctcctactttgcacagacttggtattcaggcttttcagccaaaa
ttgattgaaggaaaagcgatccagttgcacccattagtttgtacggctttcaacgccgat
ttcgatggtgaccagatggcggttcacttacctttaggaccagaagctattttagaggct
caattattaatgctggcttctcataatatcttgaaccctgcaaatggagctcctatcacg
gtaccttctcaggacatggtcttgggtctatactatatgaccaaagagcgtatttctaca
gaagatcacattattttaggtcaggatttgactttctattctgctgaagaagtaaacatt
gcattaaacgaaggaagattagaattgaatgcccgtgtgaaaatcagagcaaaagatttt
aatgacgctggagaattagtgtacaaaattattcaaacaactgcaggacgtgtattattt
aacgaagtagtacctgaagcagctggatatatcaatgacgtattgactaagaaaaacctt
agagatattatcggacacattttaagtgtgactgatgtacctacaacggcagctttcttg
gataatatgaaagatatggggtataaattcgcatttagaggaggtttatcattctcttta
ggcgatattagaattccagaacaaaaaacgaagttaattgcagatgccagagagcaagtt
gaagggatctcaactaactataacatgggtcttatcacaaataacgaacgttacaaccaa
gttattgacgtatggacttcagcaaatgcgcagttaacagagttagcaatgaaaaatatt
agagaagaccaacaaggtttcaactctgtatatatgatgcttgactctggggcgaggggt
tctaaagaacagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaa
tctactgctggtggtggtgagattattgaaaacccgattctttctaactttaaggaaggt
ctttcgatccttgagtacttcatttctactcacggtgctcgtaaaggtcttgcggatacg
gctcttaaaacagccgatgctggttacttaacaagaaggcttcatgacgtttctcaagat
gttattgttaacattgaagattgtggaactcttagaggtgttgaagttgctgcattgaag
aaaaatgaggaaatcgttgaatctttaggagagagaattttaggacgtgttgcattacaa
gacgttattaatcctcttactaacgaagtaatggttaaatctggagagcaaattacagaa
tcaatcatgagaactattgaagcttctccaattgaaaaagtagaagttagatctccatta
acttgtgaagctttaaaaggtatttgtgctaaatgttacggtagaaacttagctactgga
aaaatgacacaaagaggagaagctgtcggagttattgcagctcagtctattggtgagcca
ggtacacagttaacacttcgtacgttccacgttggaggggttgctggaggtatctctgaa
gagtctagtattgttacaagattcaatggtagacttgagattgaagatttaaaaacggtt
aaaggtgaagacagcgaaggtaatgcggtagatatcgtagtatcacgttcaactgagtta
aaattagttgatgagaaaacgggaatcgtcttaaatacacataatattccttacggttct
agtatctttgttaaagatggcgaaactgttgctaaaggaactgtaatctgtaagtgggat
ccttataatggtgtaattgtttctgaatttactggtaagattgcttacgaagatttagag
caaggacaatcattcatggttgagatcgatgagcagactggtttccaggaaaaagtaatt
tctgaggctagaaacaaaaaattaattccaactttattggtttatggtaaagaaggtgaa
ttgattcgttcttacaacttaccagtaggtgcacacttaatggttgaaaacggtgagaaa
attaaagcaggtaaagtattagtaaaaattccgcgtcgttcttctaaagcaggcgatatc
acgggaggtttaccaagaattaccgagcttcttgaggctcgtaacccttctaacccagcg
gttgtatctgaaattgatggtgttgtttcttttggaaaaatcaaaagaggtaaccgtgag
atcgttatcgaatctaaatttggtgaggttaaaaagtatttagttaaactttcaagccaa
atcttagtacaagaaaatgacttcgtaagagcgggagttccattgtctgacggtgcaatt
acaccagatgatatcttaagaattcaaggaccggctgctgttcaacagtacctggtaaat
gaaattcaagaggtttaccgtttacaaggggtaaaaattaatgacaagcactttgaggta
gttattcgtcaaatgatgcgtaaagtaagagttcaggatccaggtgatactttattctta
gaagatcaattaattcacactaaagatttcatcgttcaaaacgataaattatatggtatg
aaagtagttgaagatgctggagattcttcagtattgaaaccaggtcagattatttctcct
cgtgaattgcgtgatgaaaactcactattgaaacgaaatgataaaaatcttgttgtagca
agagacgtaattactgcaactgcaacgccagttcttcaaggtattacaagagcttcgtta
caaactaaatcattcatttctgcggcttcattccaggagacaacgaaagtacttaacgaa
gctgctgtagctggtaaagtagatgatttagaaggattgaaagaaaatgtaattgttgga
cacagaatccctgcgggaactggtatgagagagtacgataatactatcgtaggatctaaa
gatgattacaatgaaatgatggctaataaagaagaatatatttattaa
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