Flavobacterium soyae: AABD74_19470
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Entry
AABD74_19470 CDS
T10840
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fsf Flavobacterium soyae
Pathway
fsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AABD74_19470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsf03019
]
AABD74_19470
Enzymes [BR:
fsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AABD74_19470
Messenger RNA biogenesis [BR:
fsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AABD74_19470
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WYZ19336
UniProt:
A0ABZ2UHT4
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All DBs
Position
4714480..4715727
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AA seq
415 aa
AA seq
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MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVD
ALKNGVDVLVATPGRLLDLQKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRIYFVDKTEKRNLLYHLI
KNENLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIDQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYWKDI
KKLIKVDVKIITDHPYPWHAGSPEAGEKPKNSNRSGGAHKSRKSSASKQNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaaaagccgtatttgaagaaggc
tacctaaatcccactccaattcaggaaaaatcgattccgattgttttagccggacgggat
ttaattggctgtgcacaaacgggtacgggaaaaactgccgcatttgctattccaattata
catcaactgcaccgaattgtgggttcatcaaaaaaagccaaacaaatccgtgcccttatt
gtaactcctacccgtgagctagcagtgcagattgggcagagttttgacacgtattctaaa
tataccaatttaacgcaattaacgatttttggcggtgtttctcaaaatccgcaggtcgat
gctttaaaaaatggtgttgatgttttagttgctactccgggccgattattagatttacaa
aaacaaggttttcttgatttaaatcatttacacactttagttctggatgaggccgatcaa
atgctggatatggggtttataaacgatgtaaaaaagatcgtaaaacttactcctaaaaac
agacaaactttacttttttctgctacaatgcctcttgcgattcgcgaattggcagaaatg
tttttgcaggatccggaaaaagtcgaagtttctccggtttcatcaactgctgaaaacgtt
gaacagcgcatttattttgtcgacaaaacagaaaaaagaaaccttttatatcatttgatt
aaaaatgaaaatttatcaaatgtgctggttttttcaagaactaaacatggcgctgataat
gttgtaaaagcactgcgcaaaaaagatattccggcagaagctattcacggagacaaatcg
caaaatgcgagacagcgtgttttagatgcttttaaaaataaagaagttggcgttcttgtt
gctacagatattgcggcgagaggaattgatattgatcaattaccgtatgtaattaacttt
gatttacctaatattccggaaacatacgtgcatcgaattggccgtacagggcgtgcagga
aatggcggaattgccatttcattttgcggtaaagacgaagaaccttactggaaggatatt
aagaaattaataaaagtcgatgtaaaaattattacagaccatccttacccatggcatgca
ggaagtcctgaagccggcgaaaaacctaaaaattcaaaccgaagcggcggtgctcacaaa
tcgagaaaatctagtgcttcaaaacaaaataaaaaacgctggtattaa
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