Frateuria soli: LQ771_02385
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Entry
LQ771_02385 CDS
T08854
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fsg
Frateuria soli
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsg03019
]
LQ771_02385 (hrpA)
Enzymes [BR:
fsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LQ771_02385 (hrpA)
Messenger RNA biogenesis [BR:
fsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LQ771_02385 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
AAA_22
HA2_C
AAA_19
HA2_N
nSTAND3
SRP54
AAA_25
AAA_30
NACHT
T2SSE
AAA_23
PhoH
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
UGB38723
LinkDB
All DBs
Position
547122..551309
Genome browser
AA seq
1395 aa
AA seq
DB search
MHDSPPAPPPEARLRTLREALAGVSSRDFGRLLGRWRVLSRQPDARKLEALAADIAASAA
RRQVRAEAKPAIRLDESLPISARADEIVELIRRHQVVVIAGETGSGKTTQLPKLCLAAGR
GEAGMIGCTQPRRLAARSVARRVAEELGTPLGEQVGFQVRFTDQVSERTLVKFMTDGILL
AETQRDPWLSAYDTVIIDEAHERSLNIDFLLGYLKRLAARRPELKIIVTSATIDTARFAE
HFDDAPVVSVEGRAYPVEVRWRPADAAGAHPVRDRGPQARDTSDRVQQGSAEHVGLVIDE
IMADRSLGGGPGDVLVFLPGEREIRDAHLLLSRRQYRETEVLPLYARLSASDQDRVFKPG
PKRRIVLATNVAETSLTVPRIRYVVDTGSARVMRYSQRSQLERLHVEPVSQAAADQRKGR
CGRIGAGICYRLYDEADFESRARYTDPELLRSSLANVILRMLSLKLGEVEDFPFLEAPDP
RMVADGYRRLAEISAIDERRHLTAIGRQLARLPIDVQLARMLVEAHERHALRELLVVVAF
LSIQDPRERPADARQQADAAHAAFADPKSDFVGVLNLWREYTKAHEELTQSKLRDWCGRH
FLSFLRMREWRELHRQLLLVVAELGWNPAAPSPLRGEGRGEGTRSRRTTGEANKTQTPSP
PASPGERVGDRTRASRSEAQGSRRSRTAPGEPRPLTPALSPEGRGSEDAASAELYEAIHR
SLLAGLPTQVGHKDEKGVYRSTRERKFQVFPGSALAKAPPAWIFAAQILDVGGRVWGMSC
ARVEPAWIEQQAAHLVKASCRDAHWSRKRGTVVAYEQVSLFGLTLVERRPVTFQHQDPAL
AHAIFLREALARGDLDARADFVRANQRVLAQAHEIEAKQRREGLLRGEEELARFFEGKLP
EDVASTRALDAWYSRARPTEQAALRWSLEEVMAGGSGLDPKAFPATLELVPEVAGGAPAA
PQRYKLEYRFVPGDEADGVTLQLPLAMLNALPAARCEWLVPGLLADKVAELIRGLPKALR
RNFVPAPDFARAFAEAELPRDQPLIQALAAFLRRTTGVDAPVAEFAAVELPPHLKMRFRL
HDERGKTLATSRDLAALRTQWETRAREAFSRKTDVELTREDITRWDFEEIPAQVRSEGGL
NAFPALVDLGEAAALRVFERRDEALAAHLKGVERLLRNALASEMKQARRRLPIANPLSLK
YAPLGSVDSLREDLVEGGFADLLATHDLDARTAGDFEALRTALARELFAAAVERLKLVEP
IIEAQADLKPWLEPPLIGFARASYDDLREQLDALLAPGFARELPNARLAHYPRYLKAMRL
RAERLRQDPARDQQRMLQVLPYWREYLRHRAGGGADLDELRWLIEEWRVSLFAQELKTAE
PVSAKRLARALEALP
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacagcccgcccgccccgccgcccgaagcccgcctgcgcaccctgcgcgaggcg
ctcgcgggcgtgtccagccgcgactttggccgcctgcttggccgctggcgcgtgctttcg
cgccagccggacgcgcgcaagctcgaggcgctggcggccgacatcgccgcctcggcggcc
aggcggcaggtgcgcgcggaggccaagccggcaatccggctggacgaatcgctgccgatc
agcgcgcgtgccgacgagatcgtcgagctgatccgcaggcaccaggtcgtggtgatcgcc
ggcgaaaccggttcgggcaagaccacccagctgcccaagctgtgcctggccgccgggcgc
ggcgaggcgggcatgatcggctgtacccagccgcgccgcctggccgcgcgctcggtggca
cggcgcgtggcggaggagctgggcacgccgctgggcgagcaggtcggcttccaggtgcgc
ttcaccgaccaggtgtccgagcgcacgctggtcaagttcatgaccgatggcatcctgctg
gccgagacccagcgagatccatggctgtcggcctacgacacggtgatcatcgacgaggcg
cacgagcgcagtctcaacatcgatttcctgctcggctacctcaagcggctcgccgccagg
cggccggaactgaagatcatcgtcacctcggcgacgatcgacaccgcgcgcttcgccgag
cacttcgacgacgccccggtggtctcggtcgagggccgcgcctacccggtggaggtgcgc
tggcgtcccgcggacgctgcaggagcgcacccggtgcgcgaccgcggcccgcaggcccgc
gacacgtccgaccgcgtccagcagggcagtgccgaacacgtcgggctggtcatcgacgag
atcatggccgaccgcagcctcggcggcggacccggcgacgtgctggtgttcctccccggt
gaacgcgaaatccgcgacgcgcacctgctgctctcgcgccgccagtaccgcgagaccgaa
gtgctgccgctgtacgcgaggctgtcggcgtccgaccaggaccgcgtgttcaagcccggg
ccgaagcggcggatcgtgctggccaccaacgtggccgaaacctcgctcaccgtgccgcgc
atccgctacgtggtcgacaccggcagcgcccgggtcatgcgctacagccagcgcagccag
ctcgagcgcctgcacgtggagccggtttcgcaggcggccgccgaccagcgcaagggtcga
tgcggccgcatcggggcgggcatctgctatcgcctctacgacgaggcggatttcgagagc
cgcgcgcgctacaccgatccggaactgctgcgctcgtcgctcgcgaacgtgatcctgcgg
atgctctcgctgaagctcggcgaagtggaggatttcccgttcctggaggcgcccgatccg
cgcatggtggccgacggttaccgtcgcctggcggaaatctcggcgatcgacgagcgtcgg
catctgaccgcgatcggccgccagctcgcgcggttgccgatcgacgtccaactggcgcgc
atgctggtcgaggcgcacgagcgccacgccctgcgcgagctgctggtggtcgttgctttc
ctgtcgatccaggacccgcgcgagcggcccgccgacgcgaggcagcaggccgatgcggcg
catgcggcgtttgccgacccgaagtcggatttcgtcggcgtgctcaatctgtggcgcgag
tacacgaaggcgcacgaggaactcacgcagtcgaaactgcgcgactggtgcgggcggcat
ttcctttcgttcctgcgcatgcgcgagtggcgcgagctgcaccggcagttgttgctggtg
gtggcggagctggggtggaaccccgcggctccctctcccctgcggggagagggccggggt
gaggggacacgctcgcgaaggaccaccggcgaagcgaacaagactcagactccctctccc
ccggcctcgccgggggagagggtcggggacaggacgcgcgcttcgcgcagcgaagcgcag
ggttctcgccgctccaggacagctccgggcgagccccggcccctcaccccagccctctcc
ccggaagggagagggagcgaagatgcggcaagcgcggagctctacgaagcgattcaccgc
tccctgctcgccgggctgcccacccaggtcggccacaaggacgagaagggcgtctaccgc
tccacccgcgagcgcaagttccaggtcttccccggctccgcgctggccaaggcaccgccc
gcctggatcttcgccgcgcagatcctggacgtcggtggccgcgtgtggggcatgagctgc
gcgcgcgtggagccggcctggatcgagcagcaggccgcgcacctggtcaaggccagctgc
cgcgacgcgcactggtcgcgcaagcgcggcacggtggtcgcctacgagcaggtcagcctg
ttcgggctgaccctggtcgagcgtcgtccggtcactttccagcaccaagacccggcgctc
gcgcacgcgatcttcctgcgcgaggcactggcacgcggcgacctcgatgcacgcgccgat
ttcgtgcgcgccaaccagcgcgtgctggcccaggcgcacgagatcgaagccaagcagcgt
cgcgagggcctgctgcgcggtgaagaggaactggcgcggttcttcgaaggcaagctgccc
gaggacgtcgccagtacgcgcgcgctcgacgcctggtacagccgcgcacgccccacggag
caggccgcgctgcgctggtcgctcgaagaagtgatggccggcggcagcgggctggatccg
aaggcgttccccgccaccctcgagctcgtgccggaggtggccggtggggcgccggccgcg
ccgcagcgctacaagctcgaataccgcttcgtgccgggcgacgaggccgacggcgtcacc
ctgcagctgccgctggcgatgctcaatgcgttgccggccgcccgctgcgagtggctggtg
cctggcctgcttgccgacaaggtggccgagctgatccgtggcctgcccaaggcactgcgg
cgcaacttcgtgccggcgcctgatttcgcgcgcgcattcgccgaagccgagctgccgcgc
gaccaaccgctgatccaggcgctggccgcttttctcaggcgcaccaccggcgtggacgcc
ccggtcgccgaattcgccgcggtggaactgccaccccatctgaagatgcgcttccgattg
cacgacgagcgcggcaagaccctcgccaccagccgcgacctcgccgccctgcggacgcaa
tgggaaacccgggcgcgcgaagccttctcgcgcaagaccgacgtggagctcacccgcgaa
gacatcacccgctgggatttcgaggagattcccgcgcaggtgcgttcggagggcggcctg
aatgcgttcccggcgctggtcgacctgggcgaggcggccgcgctgcgcgtgttcgagcgc
cgcgacgaagcactagccgcgcacctgaaaggcgtcgagcggctgctgcgcaacgcgctc
gccagcgagatgaagcaggcccgccgacgtctgccgatcgccaacccgctgtcgctcaag
tacgccccgctgggcagtgtcgactcgttgcgcgaggacctggtcgagggcggcttcgcc
gacctgctcgcgacgcacgacctcgatgcgcgcacggccggcgatttcgaggcgctgcgc
accgcgctcgcgcgcgagctgtttgccgcggcggtcgagcggttgaaactggtcgagccg
atcatcgaagcgcaggccgatctcaaaccgtggctcgagccgccattgatcggcttcgcc
cgcgccagctacgatgacctgcgcgagcagctcgacgcgttgctggcgcccgggttcgcg
cgcgagctgcccaacgcccgcctggcccattacccgcgctacctcaaggccatgcgcctg
cgcgccgaacggctgcgccaggatccggccagggatcagcaacgcatgctgcaggtgctg
ccgtactggcgcgagtaccttcggcatcgggccgggggcggggcggatctcgacgagctg
cgctggctgatcgaagaatggcgcgtctccctttttgcccaggagctcaagaccgccgaa
ccggtttcggccaagcgtctcgcccgcgccctcgaagcgttgccctga
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