Frateuria soli: LQ771_03200
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Entry
LQ771_03200 CDS
T08854
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fsg
Frateuria soli
Pathway
fsg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LQ771_03200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsg03021
]
LQ771_03200 (rpoC)
03400 DNA repair and recombination proteins [BR:
fsg03400
]
LQ771_03200 (rpoC)
Enzymes [BR:
fsg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LQ771_03200 (rpoC)
Transcription machinery [BR:
fsg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LQ771_03200 (rpoC)
DNA repair and recombination proteins [BR:
fsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LQ771_03200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UGB38873
LinkDB
All DBs
Position
712568..716782
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRTTPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVIDPGLTALEKGQLLSEDQYLEATEEHGDEFDARM
GAEAVYELLKSIDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEPMVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMATNNILSPANGEPIIVPTQDVVLGLYYMTRELVNAKGTGMVFSGISEVRRAYENR
AVQLHAKVKVRLKQVTIGEDGERTSSTSLVETTVGRALLAEIMPEGLPFALANTELTKKN
ISRLINACYRRLGLKETVIFADQLMYTGFRFATRAGISIGIDDMIIPDEKKPILEEAEKE
VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVTDADGKTVNQKSMN
SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTSHDCGTEDGVLMQPIVEGGDVVEPLRERVL
GRVVVEDVYGPGNDDDAIVTRDTLLDEALVEKLDKAGVQSIKVRSPITCEASHGVCALCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVSVKTTGTLK
FNNLKTVQHSQGHLVAVSRSGEVSVIDANGRERERYKVPYGATISVKDGAAVKAGQTVAN
WDPHTHPIVSEVAGTVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRGTAAKDLRPIVR
LEDAKGRELKLPGTDVPAQYMLPAGAIVSIQNGVEVGVGDVVARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGVVSFGKDTKGKQRLIIKDADGNEHEELIPKWRQVIVFE
GEHVEKGETVVDGEPNPHDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEAIIRQM
LRKVEITEPGESHYLRGEQVERVRINEENERAVGRGERPAEYQSVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHAQRRRQGGLTASEL
ETLSGSSAAVTFAETTAGSDEGAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaaccttttcaaccagcagcgcaccacgcccgacttcgacgcgatc
aagatcgcgctggcgtcgcccgagctgatccgctcgtggtcgtacggcgaggtgaagaag
cccgagacgatcaactaccgtaccttcaagcccgagcgcgacggtctgttctgcgccgcg
atcttcggtccggtgaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcacggaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccgaccgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgacgctgcgcgacatcgagcgcatcctgtat
ttcgaggcctacgtggtcatcgatccgggcctgaccgcgctggaaaagggccagctgctc
agcgaggaccagtacctggaggcgaccgaggagcacggcgacgagttcgacgcccgcatg
ggcgccgaggcggtctatgagctgctgaagtcgatcgacctgccgggcgaagtcatccgc
ctcaaggaagagatcgcctcgaccaattcggaaaccaagctcaagcgcctcaccaagcgc
gtcaagctgatcgaggccttcctggagtcgggcaacaagcccgaatggatggtcatgacc
gtactgccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgaag
cgcctgctcgaactcaacgcgcccgacatcatcgtgcgcaacgagaagcgcatgcttcag
gagtcggtcgatgcgctgttggacaacggccgccgcggccgggccatcaccggcaccaac
aagcgcgcgctgaagtcgctcgccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactccggccgttcggtgatcgtggtcggcccgacc
ctgcgcctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaagccgttc
atcttcgccaagctgcaggcccgcggcgaggccaccaccatcaaggcggccaagaagctg
gtcgagcgcgaagaaccgatggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgctgctcaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccgaag
ctgatcgaaggcaaggcgatccagttgcacccgctggtctgtaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctctcgatcgaggcgcagctcgaagcg
cgtgccctgatgatggcgaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgacgcaggacgtggtgctgggcctgtactacatgacccgcgagctggtgaacgcc
aagggcaccggcatggtgttctcgggcatctccgaggtgcgacgcgcctatgagaaccgc
gccgtgcagctgcacgccaaggtcaaggtgcgtctcaagcaggtgacgatcggcgaggat
ggcgagcgcacctccagcacctcgctggtggaaaccaccgtgggtcgcgcgctgctggcc
gagatcatgcccgagggcctgcccttcgcgttggccaacaccgagctcaccaagaagaac
atctcgcgcctgatcaacgcctgctaccgccgcctgggtctgaaagagacggtgatcttc
gcggatcagctgatgtacaccggcttccgctttgctacccgtgcgggcatctcgatcggc
atcgatgacatgatcatcccggacgagaagaagccgatcctggaagaggccgagaaagaa
gtggtcgagatccaggagcagtaccagtcgggcctggtcaccgcgggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagctcgtcgccaaggcaatgatcgacggc
atcggcaccgagaaggtgaccgacgccgacggcaagacggtcaaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgcggttcggtcgcgcagatccgacagctg
gccggcatgcgcggcctgatggcgcgtccggacggttcgatcatcgagactccgatcaag
gccaacttccgcgaaggcctgaacgtgctgcagtacttcaactcgacccacggtgcccgc
aagggcctggcggataccgcgttgaagacggccaactccggttacctgacccgtcgtctg
gtcgacgtcgcccaggacgtggtggtgacctcgcacgattgcggcaccgaggacggcgtg
ctgatgcagccgatcgtcgaaggcggcgacgtcgtcgagccgttgcgcgagcgcgtgctc
ggccgcgtggtggtcgaggacgtctatggtcccggcaacgacgacgatgcgatcgtcacc
cgcgacacgctactggacgaggcgctggtcgagaagctggacaaggccggcgtgcagtcg
atcaaggtccgctcgccgatcacctgcgaggccagccatggcgtttgcgcgctgtgctac
ggccgcgacctggcccgtggccacctggtcaacatgggcgaggccgtgggcgtggtcgcc
gcgcagtcgatcggcgaacccggtacccagctgaccatgcgtaccttccacatcggtggc
gcggcctcccgtgccgccgccgtggacaacgtctcggtcaagaccaccggcacgctgaag
ttcaacaacctcaagaccgtgcagcactcccagggtcacctggtggcggtgtcgcgttcg
ggcgaggtgtcggtgatcgacgccaacggccgcgagcgcgagcgctacaaggtgccgtac
ggcgccaccatctcggtcaaggacggcgcggcggtcaaggctggccagaccgtggccaac
tgggatccgcacacccatccgatcgtgtcggaagtggccggtaccgtgcgcttcatcgac
ttcctcgatggcgtcaccgtgcagagccagactgacgagctgaccggcctggagtcggca
gtggtgaccgatccgaagcgtcgcggtaccgccgccaaggacctgcgcccgatcgtgcgc
ctggaagatgccaagggtcgcgagctcaagctgccgggtaccgacgtgccggcgcagtac
atgctgccggccggcgcgatcgtgtcgatccagaacggcgtggaagtgggcgtcggcgac
gtggtcgcccgtatcccgcaggagacgtcgaagacccgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaggcgcgcaagccaaaggagccggcgatcctggccgagcgt
tccggcgtggtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggat
gccgacggcaacgagcacgaggagctgattcccaagtggcgccaggtcatcgtgttcgag
ggcgagcacgtggagaagggcgaaaccgtcgtggacggcgagcccaatccgcacgacatc
ctgcgcctgctgggcgtggagccgctggcggcgtacctggtcaaggaaatccaggacgtc
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggcgatcattcgccagatg
ctgcgcaaggtcgagatcaccgagccgggcgagagccactacctgcgcggcgagcaggtc
gagcgcgtacgcatcaacgaggagaacgagcgcgcggtcggtcgtggcgagcgtccggcc
gagtaccagtcggtgctgctgggtatcaccaaggcgtcgctggccaccgagtcgttcatc
tcggccgcgtccttccaggaaaccacccgcgtgcttaccgaggcggcggtccgcggtacc
cgcgataccttgcggggcctcaaggaaaatgttattgtcggccgtctgattccggcaggt
acgggtctggcgtaccacgcgcagcgtcgtcgccagggcggtttgaccgcctcggaactg
gaaaccctttccggttcctccgccgcggtgacgttcgcggaaacgactgccggtagcgat
gaaggtgccgagtaa
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