Frateuria soli: LQ771_05115
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Entry
LQ771_05115 CDS
T08854
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fsg
Frateuria soli
Pathway
fsg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LQ771_05115 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsg03400
]
LQ771_05115 (mfd)
Enzymes [BR:
fsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQ771_05115 (mfd)
DNA repair and recombination proteins [BR:
fsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LQ771_05115 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
ERCC3_RAD25_C
AroM
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UGB39228
LinkDB
All DBs
Position
complement(1126187..1129798)
Genome browser
AA seq
1203 aa
AA seq
DB search
MPQIPHPPLPTTPKQRRFWTPPHGSSRALLIAEAARDHAGLLVAVARDTQRASTLEDELR
LFSGDLPVLHFPDWETLPYDVFSPHPEIVSQRIAALYRLPMVTRGVLVVPVATLMQRIAP
RSHITGSGLVVSKGQKLDLAAEQRRLEAAGYRHVPQVAEPGDYAVRGALIDIFPMGTAEP
YRVELFDDEVDSIRSFDPETQRSQQPVDKVELLPAREFPLTEEAARDFRTALRERFPIDI
RRCPLYQDMKEGVTPGGIEYYLPLFFKQTATLFDYLGEGALFVLGEGAGEASDQFWANTA
ERYEQRAHDIERPVLPPAELYLSPEQLREQLNRRLRVEVVPSGHEHAVDSGTLPAPEVPL
NRKGEEPGTSLRHFLESYPGRVMIAADSAGRREALAETLAAAGLKPVNVEGWSAFLGRSR
DTAGSAPSPPAQPGDRAGERGALAPAPSPGQSKNKGLPLSPTLSPGRAGGEGAGLRFAIT
VAPLEQGFALKQPAITVLTERELYGERVRTDRKRRRGAARDPDAIIRDLTELSVGAPIVH
VDHGVGRYQGLVSMELGGMEGEFLVIEYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSL
GGDAWERARRKAAEKVRDVAAELLAIYAQREARGGESISIDRGMVEAFGASFPFEETPDQ
EQAIDAVLQDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAVLVPTTLLAQQH
YRNFADRFADWPVKVDVLSRFKSSKEVNESLKRLADGQIDVIVGTHKLLQSDIKFKNLGL
VVVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLITTPPAHRMA
VRTFISTWDPATIREAFQRELSRGGQVYFLHNEVDSIERTARELQELIPEARIGIAHGQM
PERELERVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQLRGRVGR
SHHRAYAYLIVPDRKAITADAEKRLEALASLEELGAGFTLATHDLEIRGAGELLGEEQSG
QIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLPDVHTRLT
LYKRIASAKDEDHLRDLQVEMIDRFGLLPEPTKTLFALSSLKLMATPLGIRKLDLGANGG
RITFRDKPEIEPIAIIRLIQSQPRVYKLDGQDKLRITLDLPGATERIRAAQEVLVQLGAR
RPG
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgccccagatcccccacccgcccctccccaccactcccaagcagcgccgcttctggacc
ccgccccacggctcctcgcgcgccctgctgatcgccgaggccgcgcgcgaccacgccggc
ctgctggtggcggtcgcgcgcgacacccagcgcgcctcgacgctggaagatgagttgcgc
ctcttcagcggcgacctgccggtgctgcacttccccgactgggagacgctgccctacgac
gtcttcagcccgcatccggagatcgtctcccagcgcatcgccgcgctctaccggctgccg
atggtcacccgcggcgtgctggtggtgccggtggcgacgctgatgcagcgcatcgcgccg
cgctcgcacatcaccggctccggcctggtcgtatcgaagggccagaagctggaccttgcc
gccgaacagcggcgcctggaagcggccggctatcgccacgtgccgcaggtggccgagccg
ggcgactacgccgtgcgtggcgcgctgatcgacatcttcccgatgggcaccgccgagccc
taccgcgtcgagctgttcgacgacgaggtcgactcgatccgcagcttcgacccggaaacc
cagcgctcgcagcagccggtggacaaggtggaactgctgcccgcgcgcgagtttccgctc
accgaggaggcggcgagggatttccgcactgcgctgcgcgagcgctttccgatcgacatc
cgccgctgtccgctctaccaggacatgaaagaaggcgtgacgcccggcggcatcgagtat
tacctgccgctgttcttcaagcagaccgccacgctgttcgattacctgggcgaaggggcg
ctattcgtgctgggcgaaggcgccggcgaggcctccgaccagttctgggccaacaccgcc
gagcgctacgaacagcgcgcgcacgacatcgagcgcccggtgctgccgccggccgagctc
tacctctcgcccgagcaactgcgcgagcagctcaaccgccgcctgcgcgtggaggtggtc
ccctccggccacgaacacgccgtcgactcgggcaccctgcccgcacccgaggtgccgctc
aaccgcaagggcgaggagcctggcacctcgttgcggcatttcctggagagctaccccggc
cgcgtgatgatcgccgccgattcggcgggtcggcgcgaggcgttggccgagacgctcgcc
gccgccggcctcaagccagtgaacgtggagggttggtccgccttcctgggcaggtcccgc
gacaccgcgggatctgccccctcgcccccggcgcagccgggggatagggctggggagagg
ggggctcttgctcctgctccttcacccggacaaagcaaaaacaagggcctccccctctcc
ccaaccctctcccccggcagggccgggggagagggagctggtctgcgcttcgccatcacc
gtcgcgccgctggaacagggcttcgccctcaagcagccggcgatcaccgtgctcaccgag
cgcgagctctacggcgaacgggtgcgcaccgaccgcaagcggcgccgcggcgcggcgcgc
gatccggacgcgatcatccgcgacctgaccgaactctcggtcggcgcgccgatcgtgcac
gtcgaccacggcgtgggccgctaccagggcctggtgtcgatggaactgggcggcatggaa
ggcgagttcctggtcatcgagtacgccaagggcgacaagctctacgtgccggtggcgcaa
ttgggcctggtcagccgttactccggcactgcgcccgagctggcgccgctgcactcgctc
ggcggcgacgcatgggagcgcgcacgcaggaaggccgccgagaaagtccgcgacgtcgcc
gcggaactcctcgccatctacgcccagcgcgaagcgcgcggcggcgagtcgatcagcatc
gaccgcggcatggtcgaggcgttcggcgccagcttcccgttcgaggagacgcccgaccag
gagcaggccatcgatgccgtactgcaggacctggccgcgccgcgcgcgatggaccgcgtg
atctgcggcgacgtgggcttcggcaagaccgaggtcgcgctgcgcgccgccttcgccgca
gccaccgccggcaaacaggtggccgtgctggtgcccaccaccctgctcgcccagcagcac
taccggaacttcgccgaccgcttcgccgactggccggtgaaggttgacgtgctatcgcgc
ttcaagtcgtccaaggaagtgaacgaatcgctcaagcgcttggccgacgggcagatcgac
gtgatcgtgggcacccacaagctgctgcagtcggacatcaagttcaagaacctcggcctg
gtcgtggtcgacgaggaacagcgcttcggcgtgcgccagaaggaacagctgaaaaagctg
cgcgccgaggtcgacctgctcaccatgaccgccacgccgatcccgcgcacgctcaacatg
gcgatggccggcctgcgcgacctctcgctgatcaccaccccgccggcgcaccgcatggcc
gtgcgcaccttcatcagcacatgggacccggccactatccgcgaggcattccagcgcgag
ctctcgcgcggcggccaggtctacttcctgcacaacgaggtcgactcgatcgagcgcacc
gcgcgcgagttgcaggagctgatcccggaagcgcgcatcggcatcgcccacggccagatg
cccgagcgcgagctcgaacgcgtgatggccgacttccaccgccagcgcttcaacgtgctg
gtgtgcaccacgatcatcgagaccggcatcgacattcccaccgcgaacacgatcatcatc
gaccgcgccgaccgcttcggcctggcccagctgcaccagttgcgtggccgtgtgggccgc
tcgcaccaccgcgcctacgcctacctgatcgtgcccgatcgcaaggcgatcaccgccgac
gcggagaaacgtctcgaagcgctcgcttcgctggaggaactgggcgcgggcttcaccctg
gccacgcacgatctggagatccgcggcgccggcgagctgctgggcgaggagcagtccggc
cagatccaggaaatcggcttcggcctctacaccgagctgctcgaccgcgcggtgcgcgcc
ttgaagagcggcaaggtgcccgacttcgacctctcttccgaacacgagacggaagtggag
ctgcacctgcccgcgctgatcccggacgactacctgcccgacgtgcacacgcgactgacc
ctctacaagcgcatcgccagcgcgaaggacgaggaccatctgcgcgacctgcaagtggag
atgatcgaccggttcggcctgctgcccgaaccgaccaaaaccctgttcgcactgtccagc
ctgaagctgatggccaccccgctgggcatccgcaaactcgacctaggcgcaaacggcggg
cgcatcaccttccgcgacaagcccgagatcgagccgatcgccatcatccgcctgatccag
agccagccacgcgtctacaaactcgacggccaggacaagctcaggatcaccctcgacctt
cccggcgccactgaacgcattcgcgccgcccaggaggttctcgtccagctcggcgcgcgc
cgccccggctga
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