Frateuria soli: LQ771_07620
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Entry
LQ771_07620 CDS
T08854
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fsg
Frateuria soli
Pathway
fsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ771_07620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsg03019
]
LQ771_07620
03009 Ribosome biogenesis [BR:
fsg03009
]
LQ771_07620
Enzymes [BR:
fsg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LQ771_07620
Messenger RNA biogenesis [BR:
fsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LQ771_07620
Ribosome biogenesis [BR:
fsg03009
]
Prokaryotic type
rRNA processing factors
LQ771_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UGB39688
LinkDB
All DBs
Position
1669006..1672002
Genome browser
AA seq
998 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEQSLEACFVDY
GAERHGFLPLKEIADQYFTPGLNPNKSSIRELLKEGQELVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALEHLNVPDDVGLIVRTAGMGRDAEELQ
WDLDYLLTLWRSISEAAAKQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLYNDAR
EFMQQVMPNALRKLKQYKDDTPLFSRYQIETQIESAFDRQVRLPSGGSIVIDQTEALTAI
DINSSKATKGSDIEETAFNTNCEAAVEIARQLRIRDAGGLIVIDFIDMDSPRHQREVEEK
LKDALKFDRARVQVGRISRFGLLEMSRQRLRPSLGEATQVVCPRCEGHGHIRGIESLALS
TLRLIEEHAMKDNTGQVLVQAPSAVANFMLNEKRASVVEIELRNKVHVVIVADDKLETPH
IEIQRIREADMGEHSKPSYERLTAVEATPIPKMGQTLGSSEQPAVSGIVPATPAPVREEA
PAPAPIPAPVPAPSRARPASAPAPQGGVISRLLGWFRGNAAPTTQESSERKQAAPPAARQ
GRRDERNRPQQQGQGTQRTPRREQGQSQQQPKSGSGRSNNPRQRGNEAGQRQPQQQTREQ
PVRQPKPAPAPSASNDNQEPRKQAPARPERTPRPPQAEQPTTVAAASPAIEPAKEIETPV
VAQVDSGVVAPETKPESEGSQPRRRRGRRGGRRRRRHEDGTVAQDAPATQLDELDDEDRE
GDESDAPAGKAGQIPPSPRAAAVTAAAAAAASQQSEPRQVQAEPSPALAPQAEPGASETT
LPEAVVPAPAPTAFNLPPLPPIPTAAEVEPSPPARVTPDAEATVENPRPETPRTAQAEAP
APAPAPASPVAPMEAAAPAVEKPEATVSVDAGQQPTPSETPVTLPKQGDLLVHASTRPAI
TPPAEAEQEQEHEQEHEHEQEQAPPPPDRHPPRDAAQG
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgatcaacgcaactcagcgtgaagagttgcgcgtggccattgtcgat
ggccagacactctacgacctcgatatcgagatcccctcccgcgagcagaaaaaggccaac
atctacaagggccgcatcacccgcgtcgagcaatcgctggaagcctgtttcgtcgactac
ggcgccgagcgccacggcttcctgccgttgaaggaaatcgccgaccagtacttcaccccg
ggcctgaaccccaacaagtccagcatccgcgagctgctcaaggaaggccaggaactggtc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaacaacccgaaggccggcggcgtctcgcgc
cggatcgagggcgaggaccggcaggcgctgaaggaagcgctggaacacctgaacgtgccc
gacgacgtcggcctgatcgtgcgcaccgccggcatgggccgcgacgccgaagaactgcag
tgggacctggattacctgctgaccctgtggcgctcgatctccgaggccgcggccaagcag
aaggcaccgttcctgatctaccaggaatcgaagctcttcatccgcgccctgcgcgactac
ctgcgcaacgacatcggcgagatcctcatcgacgaggagtcgctgtacaacgacgcgcgc
gagttcatgcagcaggtgatgcccaacgccctgcgcaagctcaagcagtacaaggacgac
accccgctcttctcgcgctaccagatcgaaacccagatcgagagcgcgttcgaccgccag
gtgcgcctgccttcgggcggctcgatcgtgatcgaccagaccgaagcgctgaccgcgatc
gacatcaactcctccaaggccaccaagggctcggacatcgaggagaccgcgttcaacacc
aactgcgaggcggcggtcgagatcgcccgccagttgcgcatccgcgatgccggtggcctg
atcgtcatcgacttcatcgacatggacagcccgcgccaccagcgcgaggtcgaggaaaag
ctgaaggatgcgctcaagttcgatcgcgcccgcgtgcaggtcggccgcatcagccgcttc
ggcctgctcgagatgtcgcgccagcgcctgcgcccgagcctgggcgaagccacccaggtc
gtctgcccgcgctgcgaaggccacggccacatccgcggcatcgaatcgctggccctctcg
accctgcgcctgatcgaagagcacgccatgaaggacaacaccggccaggtgctggtgcag
gccccgtcggcggtggccaacttcatgctcaacgagaagcgcgccagcgtggtcgagatc
gagctgcgcaacaaggtgcacgtggtcatcgtcgccgacgacaagctcgagaccccgcat
atcgagatccagcgcatccgcgaagcggacatgggcgagcacagcaagcccagctacgag
cgcctgaccgcggtcgaggccactccgatcccgaagatgggccagaccctgggcagctcc
gagcagccggcggtcagcggcatcgtgccggccaccccggcaccggtgcgcgaggaagcg
ccggctccggcgccgattccggccccggtccctgcgccgtcccgcgcgcgtccggccagc
gcgcccgccccgcagggcggcgtgatctcgcgcctgctcggctggttccgcggtaacgcc
gcgccgaccacgcaggagagcagcgaacgcaagcaagccgcgccgccggccgcccgccag
ggtcgccgggacgaacggaaccgtccgcagcagcaaggccagggcacccagcgcaccccg
cgccgcgagcagggccagtcgcagcagcagcccaagagcggctccggcaggagcaacaac
cctcgccagcgcggcaacgaggccggccagcgccagccgcagcagcagacccgcgagcag
ccggtgcgccagcccaagccggcgccggcgccttcggcgagcaacgacaatcaggaaccg
cgcaagcaggcacccgcgaggccggaacgcaccccgcgtccgccgcaggcggaacagccc
acaaccgtagccgcggcctcgccggcgatcgaaccggcgaaggaaatcgaaaccccggtc
gtggcccaggtcgacagcggcgtcgtggcgccggaaaccaagcccgaatcggaaggcagc
cagccacgccgtcgccgtggtcgtcgcggcggtcgccgccgccgccgccacgaggatgga
acggtcgcccaggacgcccccgcgacccagctcgatgaactggatgacgaggatcgcgag
ggtgacgagtccgatgcgcctgcgggcaaggccgggcagatcccgcccagcccccgggca
gccgcggtgaccgcggctgccgccgcagccgccagccagcagtcggaaccgcgccaggtc
caggccgagccctcacccgcgctcgcgccgcaagccgaacctggggccagcgaaaccacc
ctgccggaagcggtcgtcccggcaccggcaccgacggcattcaacctgcccccgctcccg
ccgatcccgaccgccgccgaggtggagccatcgccgccggctcgggtgacgcccgacgcc
gaggcaaccgtcgagaatcccaggccggaaacgccgcggaccgcacaggcagaggcaccg
gcaccggcaccggcaccggcatcgccggtcgctccgatggaggccgccgcacccgctgtc
gagaaaccggaagcgacggtcagcgtggatgccggacagcagccaacgccgtccgaaacg
ccagtgacgctacccaagcaaggcgacctgcttgtccatgcatccacgcgcccggcaatc
accccgcctgcggaagcggagcaggagcaggagcacgagcaggagcacgagcacgagcag
gagcaggcaccgccaccgcccgaccggcatccgcctcgggatgcggctcaaggctga
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