Frateuria soli: LQ771_07675
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Entry
LQ771_07675 CDS
T08854
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
fsg
Frateuria soli
Pathway
fsg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LQ771_07675 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsg03400
]
LQ771_07675 (sbcB)
Enzymes [BR:
fsg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LQ771_07675 (sbcB)
DNA repair and recombination proteins [BR:
fsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LQ771_07675 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LQ771_07675 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LQ771_07675 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UGB39698
LinkDB
All DBs
Position
1679933..1681381
Genome browser
AA seq
482 aa
AA seq
DB search
MQTFLWHDYETFGADSRRDRPAQFAGIRTTAELEIVGEPVMFFARPPRDMAPDPDACLIT
GITPQQAEREGVSEAGFAARVHEQLAAPGTCGVGYNSLRFDDEFTRQMLYRNFFDPYGRE
WENGNSRWDLIDLVRMCQALRPEGIVWPTRDDGTPSFKLEHLAAANHLKQERAHDALSDV
YALIDLARLIRVRQPRLWDWHFELRRKQKVFGLLDVAGMTPLVHVSSRYPASRHCLAVVA
PLAPHPSRPGEVIVYDLDVDPSTWLDLGEDDIADRIFTARADLPEGIERIPLRTVRANRA
PALAPLSVLRDLDHGRLKLDLERCLRHHALLRATEGLADKLRHVFAHAADMAAPEDPELA
LYSGFLPDADKRLLAEVRATPPEQLAGRSFPFRDPRYAELLFRYRARNWPASLDADERAR
WEGFRLARLTRPTALTARTLDEYFARIAVLRQERPDQIALLDQLEAWGRELAPVLAMAAE
PL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccttcctctggcacgactacgaaaccttcggtgccgacagccggcgcgaccgg
ccggcgcaattcgccggcatccgtaccacggcggaactggagatcgtcggcgagccggtg
atgttcttcgcccgcccgccgcgcgacatggcgccggaccctgatgcctgcctgatcacc
ggcatcacgccgcagcaggccgaacgcgagggcgtgtcggaggccgggttcgccgcccgc
gtgcacgagcaactggccgcacccggcacctgcggcgtgggctacaactcgctgcgtttc
gacgacgagttcacccgtcagatgctgtaccgcaacttcttcgatccgtacgggcgcgaa
tgggaaaacggcaattcccgctgggacctgatcgacctggtgcgcatgtgccaggcgctg
cggcccgagggcatcgtctggcccactcgcgacgacggcacgcccagcttcaagctcgag
cacctggccgcggccaaccacctgaagcaggaacgcgcgcacgacgcgctgtcggacgtg
tacgcgctgatcgacctggcgcgactgatccgcgtgcgccagccgcggctttgggactgg
cacttcgagctgaggcgcaagcagaaggtgttcgggctgctggacgtggcgggcatgacg
ccgctggtgcacgtgtcctcgcgctacccggccagccgccattgcctggcggtggtcgcg
ccgctggcgccgcatccgtcacggcccggcgaggtgatcgtctacgaccttgacgtcgac
ccgtcgacctggctcgacctgggcgaggacgacatcgccgaccgcatcttcaccgcccgt
gcggacctgccggagggcatcgaacgcatcccgctgcgcaccgtgcgcgccaaccgcgcc
ccggcgctggcgccgctgtcggtcctgcgcgacctggaccacggccggctcaagctcgac
ctggagcgctgcctgcgccatcacgccctgctgcgagccaccgaagggctggccgacaag
ttgcggcatgtgttcgcccacgccgccgacatggccgcgccggaggatccggaactggcc
ctctacagcggcttcctgcccgatgcggacaagcgcctgctggcggaggtccgtgccacg
ccgccggagcagctggccggtcgcagctttcccttccgcgacccgcgctatgcggagctg
ctgttccgctaccgcgcgcgcaactggcccgccagcctggacgcggacgagcgggcgcgc
tgggagggcttcaggctcgcgcgcctgacccgccccaccgcgctcaccgcgcgcacgctg
gacgagtacttcgcacgcatcgccgtgctgcgccaggagcggcccgaccagatcgccctg
ctcgaccaactcgaggcctggggccgggagctggcgcccgtcctggccatggccgcggag
ccgctgtag
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