Frateuria soli: LQ771_09790
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Entry
LQ771_09790 CDS
T08854
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fsg
Frateuria soli
Pathway
fsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ771_09790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsg03019
]
LQ771_09790
03009 Ribosome biogenesis [BR:
fsg03009
]
LQ771_09790
Enzymes [BR:
fsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQ771_09790
Messenger RNA biogenesis [BR:
fsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQ771_09790
Ribosome biogenesis [BR:
fsg03009
]
Prokaryotic type
rRNA helicases
LQ771_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
Motif
Other DBs
NCBI-ProteinID:
UGB37126
LinkDB
All DBs
Position
2129005..2130852
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AA seq
615 aa
AA seq
DB search
MSSPVPGPTPAGHDPAPAGFAALALRPEVQQALADVGYESPSPIQAATIPSLLEGRDVLG
QAQTGTGKTAAFALPILSRIEARPGKPQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLP
IYGGQSYGPQLHALRRGVHVVVGTPGRVIDHMDKGTLDLSELRYLVLDEADEMLRMGFID
DVEKVLQATPSTRQVALFSATMPAPIRKIAQAHLKEPVEVTIKAKTTTAANIRQRYWFVS
GMHKLDALTRILEAEPFDAMIIFARTKQATEELAEKLTARGLAAAAINGDIAQPQRERVI
QQLKDGKLDILVATDVAARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILF
VTPREKGMLRAIERATRQPIEEMKLPTVEAVNDVRIARFKQRITDTMAQGELGQFQQLIE
QYEQEHNVPALEIAAALARIAQGDRPLLLTPPPKREYERREPAPREARERDGERRPPHER
KPREPREGAPPRSFDNRPPRPHNAPEPGKRTYRIEVGHEHGVKPGNIVGAIANEAGLESQ
FIGRVSIRSDYSLIDLPEGMPSEVFDHLKKVWVSQQQLRISEWDGNEEAAGSAPPRRSRP
GGFKPRTGGKPPRRK
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccccgttccaggtcccacgccggccggtcacgacccggcgccggccggtttt
gccgcgctcgcgctgcgccccgaagtccagcaggcgctggccgacgtcggctacgagtcg
ccctcccccatccaggcggccaccatcccgtcgctgctcgaaggccgcgacgtgctcggc
caggcgcagaccggtaccggcaagaccgccgcgttcgcgctgccgatcctctcgcgcatc
gaggccaggcccggcaagccgcaggccctggtgctcgcccccacgcgtgaactggccatc
caggtggccgaggcgttccagcgctacgccgcgcacatccccggcttccaggtgctgccg
atctatggcgggcagagctacggcccgcagctgcacgcgctgcgccgcggcgtgcacgtg
gtggtcggcacgcccggccgcgtgatcgaccacatggacaagggcacgctggacctgtcc
gagctcaggtacctggtgctggacgaggccgacgagatgctgcgcatgggcttcatcgac
gacgtcgagaaggtgctccaggccacgccgtcgacgcgccaggtcgcgctgttctcggcc
accatgccggcgccgatccgcaagatcgcccaggcgcacctgaaggaaccggtcgaggtc
acgatcaaggccaagaccaccacggcagccaacatccgccagcgctactggttcgtcagc
ggcatgcacaagctcgatgcgctgacccgcatcctggaagccgagccgttcgacgccatg
atcatcttcgcccgcaccaagcaggcgaccgaggagctggccgagaagctgaccgcgcgc
ggcctggccgccgccgcgatcaacggcgacattgcccagccgcagcgcgagcgggtgatc
cagcagttgaaggacggcaagctcgacatcctggtcgccaccgacgtggccgcacgcggc
ctggacgtcgagcgcatcagccacgtcttcaattacgacatcccctacgacaccgaaagc
tacgtccaccgcatcggccgcaccggtcgcgctgggcgcagcggcgaggcgatcctgttc
gtcaccccgcgcgagaagggcatgctgcgcgcgatcgagcgggccacgcgccagccgatc
gaggagatgaagctgcccaccgtcgaggccgtgaacgacgtgcgcatcgcccgcttcaag
cagcgcatcaccgacaccatggcgcagggcgaactgggccagttccagcagctgatcgag
cagtacgagcaggaacacaatgtgccggcgctcgagatcgccgccgcgctcgcgcgcatc
gcacagggcgaccgcccgctgctgctgacgccgccgcccaagcgcgagtacgagcggcgc
gaaccggcgccgcgtgaagcgcgcgagcgcgatggcgaacgccgcccgccacacgagcgc
aagccgcgcgaaccccgcgaaggcgccccgccgcggagcttcgacaaccgtccgccgcgc
ccgcacaacgcacccgaaccgggcaagcgcacctatcgcatcgaggtcggccacgagcac
ggcgtcaagcccggcaacatcgtcggcgccatcgccaacgaggccggcctggaaagccag
ttcatcggccgcgtcagcatccgcagcgactacagcctgatcgacctgcccgaaggcatg
ccctcggaggtgttcgaccacctcaagaaagtctgggtcagccagcagcagctgcgcatc
agcgagtgggatggcaacgaagaggccgccggcagcgcacccccgcggcggtcgcggccg
ggcgggttcaagccgcgtacgggcggcaagccgccgcggcgcaagtag
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