Frateuria soli: LQ771_10000
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Entry
LQ771_10000 CDS
T08854
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fsg
Frateuria soli
Pathway
fsg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LQ771_10000 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsg03400
]
LQ771_10000 (ligD)
Enzymes [BR:
fsg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LQ771_10000 (ligD)
DNA repair and recombination proteins [BR:
fsg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LQ771_10000 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGB37167
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All DBs
Position
2170220..2172781
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AA seq
853 aa
AA seq
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MSLREYDRKRRFDTTPEPRPEGSAAAGGRPIFVVQLHHASRRHYDFRLQVGDTLKSWACP
KGPSYDPDVKRLAVEVEDHPISYATFQGDIPEGAYGGGHVDTFDSGVWSTPYDPEAQLEK
GHLRFELFGSRLKGSWHLVRSGKPAKQPQWFLMHDKDAYASDVEADDLLDARMIASTRAA
AGRSGGAKEVAATLDTRKRRKVPVAGHPARKAGKLAAAAEGARKARASGDFFKPELATLR
ENPPVGEQWLHEVKWDGYRILATVAKGQVQLWSRNGLSWSDKIPDIRQAIESLGLDSARL
DGELIALGADGQADFNALQKTLSGEASAPLAYMLFDVPFLEGYDLSRTPLHARKAILEAL
LEDPPAHLSYSSHVVGNGDQVFAMASEQKLEGILSKRVASHYRGGRGDDWLKIKRVESDE
FAVVGYTAPKGGRQGFGALLLARPAAEGGWHFMGQVGSGFSHRQLLDLSRTLATGGGSKP
TVRNPDDAPRGVKWIEPTAVAEVNYRGIGNQGLLRQPSLKAMRPDKSPADLRDSDRPAPE
PRPTAPGRRASTRNAPGPASPGIIITHPERVVYPADGYTKQDVADYYRAVMDWFLPGVIG
RPTSIIRYPDGIDKPSFFQKHIPSGGLKHVGSVKLKEETGAAAIYLYPQSADSVMELVQY
GTLEFHPWGARVDTPDLADRVVFDLDPGPDVGWERVVAAARLVRKLLADLELESFLRTTG
GKGLHVVVPLDPPSDWDTVKTFAQGFAGALAGIHPLEFVAVSTKSIRHRKIFVDYLRNGR
GATAVASYSLRGRPGAPVAVPLRWEELGRIRSGAQFDIRSVPARLKRLRKDPWAGIDEVK
QSLDKVIGRLGEA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
ttgagtctcagggaatacgatcgcaagcggcgtttcgataccacgcccgagccgcggccg
gaaggctccgctgccgccggcgggcggccgatcttcgtggtgcaactgcaccacgccagc
cggcggcactacgacttccgcctgcaggtcggcgacacgctcaagtcgtgggcctgcccc
aaggggccaagctatgaccccgacgtcaagcgcctggccgtggaggtggaggatcacccg
atctcctacgcgacgttccagggcgacatccccgagggcgcctacggcggtggccacgtc
gacaccttcgacagcggcgtgtggtcgaccccgtacgatccggaggcgcaactggagaag
ggccacctgcgcttcgagctgttcggctcgcggctcaagggcagctggcacctggtgcgc
agcggcaagccggcgaagcagccgcagtggttcctgatgcatgacaaggacgcctatgcc
agcgacgtggaagccgatgacctgctcgacgcgcgcatgatcgccagcacccgggccgcc
gccggccgctccggcggcgcgaaggaggtcgcggcgacgctggacacgcgcaagcgcagg
aaggtaccggtcgccggccaccctgcccgcaaggcaggcaagctcgccgccgccgcggag
ggcgcgcggaaagccagggccagcggcgacttcttcaagcccgagctggccacgttgcgc
gagaacccgcccgtcggcgagcagtggctgcacgaggtgaagtgggacggctaccgcatt
ctcgccacggtggccaaggggcaggtccagctgtggtcgcgcaacggcctgtcctggtcc
gacaagatccccgacatccgccaggcgatcgagtcgctcggcctggactcggcccgcctc
gacggcgagctgatcgcgctgggcgcggacggccaggccgacttcaacgcgctgcagaag
acgctctccggcgaggccagcgcaccgctcgcctacatgctgttcgacgtgccgttcctg
gaaggttacgacctctcccgcacgccgctgcacgcgcgcaaggcgattctcgaggcgctg
ctggaagatccgcccgcgcacctttcctacagcagccacgtggtaggcaacggcgaccag
gtattcgccatggccagcgagcagaagctcgagggcatcctcagcaagcgcgtggcgtcg
cactaccgtggcggccgcggcgacgactggctcaagatcaagcgggtggagtccgacgag
ttcgcggtcgtcggctacaccgcccccaagggcggccggcaggggttcggcgcgctgctg
ctggcaaggccggcggcggagggcggctggcacttcatgggccaggtcggcagcggtttc
agccaccggcaactgctcgacctcagccgcacgctggccactggtggcggcagcaagccg
accgtgcgcaaccctgacgacgccccgcgcggcgtgaaatggatcgagcccacggcggtg
gcggaggtgaactaccgcggcatcggcaatcagggcctgctgcgccagccgagcctgaag
gcgatgcgtccggacaagagccccgccgacctgcgcgacagcgaccgtcccgcacccgag
cccaggccaaccgcccccgggcgccgggcgtccacgcgcaacgcgccaggccccgcatcg
cccggcatcatcatcacccaccccgaacgcgtggtgtacccggcggacggctacaccaag
caggacgtggccgactactaccgcgccgtgatggactggttcctgcccggcgtgatcgga
cggcccacttcgatcatccgttacccggacggcatcgacaaaccttcgttcttccagaag
cacatcccttccggcggcctgaagcacgtgggcagcgtgaagctcaaggaggaaaccggc
gccgccgccatctacctgtatccgcagtccgccgactcggtgatggaactggtgcagtac
ggcacgctcgaattccatccctggggcgccagggtcgacacgccggacctcgccgaccgc
gtggtgttcgacctggacccgggcccggacgtgggctgggagcgcgtggtcgcggccgcc
cggctggtgcgcaagctgctggccgatctggaactggagtcattcctgcgcaccaccggc
ggcaaggggctgcacgtggtggtgccgctcgatccgccgtcggactgggataccgtcaag
acgttcgcgcaggggtttgccggcgcgctggcgggcatccatccgctggagttcgtcgcg
gtcagcaccaagtcgatacgccaccggaagatcttcgtggactacctgcgcaacggccgc
ggcgccacggcggtcgcttcctactcgctgcgcggccgcccgggcgcaccggtggcagtg
ccgttgcgatgggaagaactgggcaggatcaggagcggcgcgcaattcgacatccgcagc
gtgccggcgcggctcaagcggttgcgcaaggacccgtgggcgggcatcgacgaggtgaag
cagagcctggacaaggtgatcggaagactcggcgaggcgtga
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