Flexistipes sinusarabici: Flexsi_0458
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Entry
Flexsi_0458 CDS
T01539
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fsi
Flexistipes sinusarabici
Pathway
fsi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fsi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Flexsi_0458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsi03021
]
Flexsi_0458
03400 DNA repair and recombination proteins [BR:
fsi03400
]
Flexsi_0458
Enzymes [BR:
fsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Flexsi_0458
Transcription machinery [BR:
fsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Flexsi_0458
DNA repair and recombination proteins [BR:
fsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Flexsi_0458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
PAH_ZNF598
DsbD_N
Motif
Other DBs
NCBI-ProteinID:
AEI14145
UniProt:
F8E993
LinkDB
All DBs
Position
485560..489618
Genome browser
AA seq
1352 aa
AA seq
DB search
MTAIKTNPTKDDKSPVFFDALRVRIASPEKIRSWSSGEVLKPETINYRTFKPERDGLFCA
KIFGPVKDWECLCGKYKRMKHRGIVCEKCGVEVIQSKVRRERMGHIDLASPVCHIWFFKG
SPSRIGAMLDLNIKDIERVIYFESYIVINPKSTPLKEKELLSEERYRKLVEEYGHGSFVA
KMGAEAIKDLLKKVDLDLSIIELKTELKETGSMQKKLKIAKRLKIMEAFRRSGNKPEWMI
LDVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLIELNAPEIIVRNEKRM
LQESVDALFDNGRRGRVIRGSNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVAG
PHLKMHQCGIPKLMALELFKPFIYYKLEKEKGLAATIKQAKKMVEEQRPEVWDILEEVIS
EHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQ
LEARTLMLSTNSVLSPAHGKPLSVPTQDMVLGIYYLTRGMDNAKGEGKVFSSPREVVVAY
DQNKLDLHARIKVRIGKNVYDTVTGRVILFEVVPEGVDFEVVNRVLGKKELTKLVDYVYK
KQGNYYTVKFLDDLKDLGFRYSTKAGFSICVDDFVIPEEKQQLVDEAFNKVMDIEEHYRE
GALTAGERYNQIIDIWSRANDSITNKLMTNLANLGGDKSAEDKHEKFYNSIFVMADSGAR
GSKAQISQLAGMRGLMAKPSGEIIETPIISNFRDGLTVLQYFISTHGARKGLADTALKTA
NSGYLTRRLVDVAQDVIVSDEDCGTIKGIEISALMEGSEVIETLGERIYGRYTLEDVYDP
VTDDLIIEANTLITEDIAEKIERAGIDRITVRSVLTCELDHGVCKHCYGMDLGTRREVEV
GESVGIIAAQSIGEPGTQLTMRTFHIGGAASASTEESGINAKFGGKVKFVDINLVRNRYE
QNVVLNRNGSIQIIDKDGRVVEKYNITYGTKILVEDGESVNQGRLLAEWDPFAAVIMTEQ
EGRVAFGDIIEGETLKEDIDPITGLSQKVVISNTRDKKQPRVSIKNKENKTVERYILPVG
AMITVEEGEEVYPGDVVAKIPRETQKTKDITVGLPRVAELFEARKPKEPGIIAEIDGVVK
IEGSTKGYRKVVIENEETGDRKNYNISIQKYVNVREGDRVKAGEALVDGLVNPHDILAVL
GEEELQKYLVNEIQEVYRKQGVTINDKHIEVISKQMLKKILIEEPGDSEFMPNEEVYKAD
FTKVQQDLLAEGLTPPKGRPILQGITKAALNTESFISAASFQETTRILTDASCSGKTDHL
RGLKENVIMGKLIPAGTGSEHIKTEKFKFMKS
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
gtgacagctattaaaactaatccgactaaggatgataaaagcccggttttcttcgatgct
ttaagagtgagaatcgcgtcaccggaaaagataagaagctggtcttccggtgaagttttg
aaaccagaaacaataaattacaggacttttaagccagaaagggacgggcttttctgtgca
aaaatattcggtcctgtaaaggactgggaatgtctttgcggcaagtataagcgtatgaaa
cacagaggcattgtctgtgaaaagtgtggtgtggaagttatccagtccaaagtaagacgg
gagcgcatgggtcatatcgaccttgcttcaccggtatgtcacatatggtttttcaaaggc
tcgccaagccgtataggtgcaatgcttgatttaaatatcaaggatattgagcgggttata
tattttgaatcttatattgtaataaatccgaaatcaacccctctaaaagagaaagaactg
cttagtgaggaaaggtacaggaagttggttgaggagtacggtcacggttcctttgttgcc
aagatgggtgctgaagctataaaggatcttcttaagaaagttgaccttgatctttccata
attgagctgaaaactgagcttaaagaaacaggaagtatgcagaaaaaactcaagattgcc
aaaagacttaagataatggaggctttccgccgcagtggcaacaagcctgaatggatgata
ctcgatgttgtgccggtaatcccgcctgagttgagacctcttgtaccattggacggagga
cggtttgcaacaagtgatctgaatgatctttacagacgtgtgattaacagaaacaacagg
ctcaaaaaactaattgagcttaatgctcctgaaatcattgtacgaaacgaaaagaggatg
ctccaggaatcggttgatgcactctttgacaacggaagaagaggcagggtcatcagaggc
tccaataaacgccctttaaaatccctcagtgacatgattaagggtaaacaggggcggttc
aggcaaaaccttctgggtaaaagggttgattactccggacgttcggtaattgttgccggt
ccgcatctgaaaatgcatcagtgcggtattccaaagctgatggctctggaacttttcaaa
ccttttatttactataaactggaaaaggaaaaggggctggccgccaccattaaacaggct
aaaaaaatggttgaggaacaacgccctgaggtctgggatattctcgaggaagttatatca
gaacatcctgttatgctgaacagagcgccaacacttcacaggctgggtattcaggctttt
gagccgaagcttgtggaaggtaaagccatacagctgcaccccctcgtttgcccggcattt
aatgctgatttcgacggtgatcagatggcagttcatgttccgttatctctcgaggcgcag
ctggaagccagaactcttatgctttcaactaacagtgtactttcaccagctcacgggaaa
cctctttctgttcccactcaggatatggtactggggatttactatctgaccagaggcatg
gataacgcaaagggcgaaggaaaggttttttcatcacctcgggaagttgtggttgcgtat
gatcaaaacaagcttgatctgcatgccagaattaaggtcaggataggtaagaatgtctat
gatacagtaaccgggagagttatactgtttgaggtggtaccggaaggtgtggattttgaa
gttgtgaacagagttctcggtaaaaaggagctgacaaaacttgttgattatgtctataaa
aaacaggggaactattatacagttaagttcctggatgatttaaaagatttaggtttccgc
tattccacaaaagccggattttcgatatgtgtagatgattttgttattcctgaagagaag
cagcagcttgttgatgaagcttttaataaggttatggatatagaggagcattaccgtgaa
ggtgctctgacagccggcgaacgttataaccagataatcgatatatggtcacgtgcaaac
gattccatcaccaataaacttatgaccaatctggctaaccttggcggtgataaaagtgcg
gaagataaacatgaaaaattttataactctatatttgtaatggctgactcaggtgcacgg
ggaagtaaagcgcagattagtcagcttgcaggtatgagaggtcttatggctaaaccttca
ggggaaattatagagacacctattatttctaatttcagagacggtcttacagtacttcag
tactttatttcgacgcacggtgcaaggaaaggccttgcggatactgctctgaaaactgct
aattcaggatatcttacaagaagacttgtggatgtggcacaggacgtaatagtatccgat
gaagattgcggaactattaagggtatagagataagtgctcttatggaaggcagtgaagtt
attgaaactctcggagaaagaatatacggaagatacactcttgaagatgtttatgacccg
gttaccgacgatctgattattgaagcaaatacacttataacggaagacatcgcggaaaaa
atagagcgcgcgggtattgacaggattactgtaagatcagtgctgacctgtgaactggat
catggtgtatgtaaacattgctacggcatggatctgggcacaagaagagaagtggaagta
ggtgaatctgtcggtataatcgctgcacaatcgattggtgaaccgggtacgcagttgacg
atgagaacgttccacatcggtggtgctgcatcagcgtccaccgaagaatccggtataaac
gccaaattcggcggtaaggtgaaatttgtggacattaatctcgtcagaaaccgttacgaa
cagaatgtagtccttaacagaaacggcagcattcagataatagataaagacggccgtgtg
gttgaaaaatacaacattacatatggaacgaaaatccttgtggaagacggtgagagtgtt
aatcagggcaggctgctggccgaatgggatccctttgcagcagtaatcatgacagaacag
gaaggaagggtagcttttggggacattattgaaggtgaaactctgaaagaggatattgac
ccgattaccggactttctcagaaagttgtgattagtaatacgagagacaagaaacagccc
agagtctctattaaaaacaaagaaaataaaacggtagaaagatacatactaccggttggg
gctatgattacagtcgaagagggagaagaggtgtatcccggcgatgtcgtagcgaaaata
cccagggaaacacaaaaaacaaaagatatcacagtgggtcttccaagggttgccgagctt
tttgaagccagaaaacctaaagaacccggtatcattgctgagattgacggtgtggtaaaa
atagaaggcagtacaaaaggctacagaaaagttgttatcgaaaatgaggaaacgggcgat
aggaagaactacaatatttcaattcagaaatatgtaaatgtcagagagggagacagggtc
aaggccggtgaagcacttgttgacgggcttgttaatccacatgatattctggcagttctc
ggtgaggaggaactgcagaagtatcttgttaatgagattcaagaagtttacagaaaacag
ggtgttaccattaacgataaacacatagaagttatctcaaaacaaatgttgaagaaaatt
ttaattgaagaaccaggtgactctgagtttatgcctaatgaagaggtatataaagccgat
tttaccaaagttcagcaggatcttttagcagaagggcttacacctcccaagggcagacct
atactgcaaggaattacaaaggcagctttgaacacagagagctttatttctgcagccagt
tttcaggagacaaccagaatacttacggacgcctcttgttccggcaagacagaccatttg
agagggcttaaagagaatgtgattatgggtaaacttatacctgccggtactgggtccgaa
cacattaagactgaaaaattcaagtttatgaagagctga
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