Flexistipes sinusarabici: Flexsi_0702
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Entry
Flexsi_0702 CDS
T01539
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fsi
Flexistipes sinusarabici
Pathway
fsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Flexsi_0702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsi03019
]
Flexsi_0702
03009 Ribosome biogenesis [BR:
fsi03009
]
Flexsi_0702
Enzymes [BR:
fsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Flexsi_0702
Messenger RNA biogenesis [BR:
fsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Flexsi_0702
Ribosome biogenesis [BR:
fsi03009
]
Prokaryotic type
rRNA helicases
Flexsi_0702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
AAA_30
Helicase_RecD
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEI14377
UniProt:
F8E424
LinkDB
All DBs
Position
723689..725272
Genome browser
AA seq
527 aa
AA seq
DB search
MQQNHSFDELGLSENLLRSVKKKGFEEPTPIQAQVIPTLLKSEKDVVGQAQTGTGKTAAF
GLPIMDRIVSDEKRVKALILAPTRELAIQVSEELNSLKGKKKMKVVPIYGGQSIELQLKR
LSSGADIVVGTPGRVIDHLNRKTLDISRLDYLVLDEADEMLNMGFIEDIESILKRANPDK
RMLLFSATMPREILNIAKRFMGEFEIFRTKSEELAAGLTEQIYFEVREPDKFEALCRIRD
MEKEFYGIIFCRTKVDVDKLANRLIDRGYNAEALHGDISQHQRERILKKFRNKQVNMLVA
TDVAARGIDIQDLTHVINYALPQDPEAYIHRIGRTGRAGKEGTAITFVTPEEYRKLLFIM
RKAKTDIRKESLPGVGEIIEAKKENIKEEILEALNSDELRNYKDIAEDLLENAEPDKLVS
ALLNIAYEDDLSEDSYREISDVYVNRKGRTRLFVALGKMDGMSPKSLVDFIIDKAGVENK
KIKDVKVFEKFSFITVPFEESEIILEIFKREKRGRRPIVEIAKEKKR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaaatcattcgtttgatgaattaggattatcggaaaatttgttaagatctgta
aaaaagaagggctttgaagagccaacaccgatacaggcacaggttatcccgacattgtta
aaaagtgaaaaagatgttgttggacaggcgcagaccggaacggggaagacagcggctttt
ggtttgccgattatggatagaattgtatccgatgagaaaagggttaaggctttaattctt
gctcccaccagggagttggccatacaggtttctgaggagttaaactcactgaaaggcaaa
aagaaaatgaaggttgtccccatatacggaggacagtctatagaactccagttgaagcgg
ctgagtagcggagctgatattgtagtggggacgcctggaagggttatagaccacctcaac
agaaaaaccctggatatatccagactagattatcttgttcttgatgaagctgatgagatg
ctcaatatgggctttatagaagatatcgagtccattctaaaaagagctaaccctgataag
cggatgctgcttttctcggccactatgccgagggaaatattgaatattgccaaaaggttc
atgggtgagtttgagattttcaggacgaaaagtgaagaacttgccgccggactgactgag
cagatatattttgaagtcagagaaccggataaatttgaagctctgtgcagaatcagagat
atggaaaaggaattttacggaattattttctgccgaacaaaagtggatgtggacaaactt
gcaaacaggcttatagacagagggtataacgctgaagccctgcatggagacatatcccag
caccagcgggaaagaattctgaaaaaattcaggaacaagcaggtcaatatgcttgttgca
acggatgtggcagcaagaggtatcgatattcaggatttgactcatgtaataaattatgca
cttcctcaggatcccgaagcttatatacatcgaatcggaagaacagggagagccgggaaa
gaaggcaccgccattactttcgttacacctgaggagtacagaaagttactttttatcatg
agaaaagccaagacagatataagaaaagaaagtctacccggtgtcggagagattatcgag
gctaaaaaggaaaatataaaagaggaaatattagaagctctcaattcggatgaattgaga
aactataaagatatcgctgaagatctgcttgaaaatgcagagcctgacaaactggtttct
gccctgttaaatattgcctatgaagatgacttgagtgaggacagttatcgtgaaataagt
gatgtttacgttaacaggaaagggaggactcgactatttgttgcccttggcaaaatggat
ggtatgagccccaagtcactggttgattttataatagataaggccggtgtggagaataaa
aagattaaagatgtaaaggtttttgaaaaattttcctttatcactgtaccttttgaggaa
tccgagattattctggaaatttttaagcgggaaaaacgcggccggagacctatcgtggag
attgcaaaagaaaagaaaaggtga
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