Flaviflexus salsibiostraticola: EJO69_00315
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Entry
EJO69_00315 CDS
T05752
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fsl
Flaviflexus salsibiostraticola
Pathway
fsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJO69_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsl03019
]
EJO69_00315
Messenger RNA biogenesis [BR:
fsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJO69_00315
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AZN28911
UniProt:
A0A3Q8WTF6
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All DBs
Position
61118..62803
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AA seq
561 aa
AA seq
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MNYALTELQTPGPLKKNALRIVPLGGLGEVGRNMTVFEINGKILIVDCGVLFPEEAQPGV
DLILPDFEYIEDRLDDIVAIVLTHGHEDHIGAVPYLLRLKNDIPIVGSQLTLAFIEAKLQ
EHRISPYTLQVAEGDIETFGPFELEFVAVNHSIPDALAAMIRTVAGNVLITGDFKMDQLP
LDGRITDLRAFARLGEEGVDLFMVDSTNAEVPGFTTSEVEIGPVLEQAFSQVTGQIVVAS
FASHVHRVQQILDAAAANNRVVAFVGRSMVRNMGIASDLGYLDVPDGVLVDLKRMNDYPP
SKRVYMSTGSQGEPMAVLSRIANENHQSIAVGPGDTVIFASSLIPGNENSVFRLINGLMR
LGAKVIHQANARVHVSGHASAGELLYCYNIVQPTAVMPIHGEIRHLVANGALAVKTGVPA
ENVMLAEDGAVIDLVDGEASMVGAVPCGYVYVDGSSVGDITEAELKDRRILSEEGFVAIF
AVVDTAKRAIISGPHIQARAMAEDDDVFEKVLPEVTKALQDVLDNDGDTYQMQQAMRRAV
GRWVSRRLRRRPMIVPTVIEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgaactacgcgctaaccgaacttcagaccccaggcccgctcaagaagaacgccctgagg
atcgtccctctggggggccttggcgaggtcggccgcaacatgaccgtcttcgagatcaac
ggcaagatcctcatcgtcgactgcggcgtcctcttccccgaggaggcccagcccggtgtc
gacctcatcctgccggacttcgaatacatcgaggacaggctcgacgacatcgtcgccatt
gtcctcacccacgggcacgaggaccacatcggagcggtcccgtaccttctgcgtctcaag
aacgacatcccgatcgtcggctcgcagctcaccctcgccttcatcgaggcgaagctccag
gagcaccgcatcagcccctacacccttcaggtggcagagggtgacatcgagaccttcgga
cccttcgagctggagtttgtcgcggtcaaccactcgattccggacgcgctcgccgcgatg
atccggaccgttgccggcaacgtcctcatcacgggcgacttcaagatggaccagctgccg
ctcgacggccgcatcaccgaccttcgcgccttcgcccgtctcggtgaagagggcgtcgac
ctgttcatggtcgactcgacgaatgcggaggtgcccggcttcacgacctcagaggtcgag
atcggtcctgtcctcgagcaggccttctcccaggtgaccggtcagatcgtcgtcgcctcc
ttcgcctcgcacgtccaccgcgtccagcagatcctcgacgcggcggctgcgaacaacagg
gtcgtcgccttcgtgggccgatccatggtgcgcaacatgggcatcgcctccgacctcggc
tacctcgacgtgccggacggcgtcctcgtcgatctcaagaggatgaacgactacccgccg
tccaagcgcgtctacatgtcgacggggtcgcagggtgagccgatggcggtgctgtcccgc
atcgccaacgagaaccaccagagtatcgcggtcggcccgggcgacaccgtcatcttcgcc
tcgtccctcatccccggcaatgagaactccgtattccgcctcatcaacgggctcatgcgc
ctcggcgccaaggtcatccaccaggcgaacgcccgcgtccacgtctcgggccacgcctcc
gccggtgagctcctctactgctacaacatcgtccagccgaccgcggtcatgcccatccac
ggcgagatccggcacctcgttgccaacggcgcgctcgccgtcaagaccggcgtgccggcc
gagaatgtcatgcttgccgaggatggcgccgtcatcgacctcgtggacggcgaggcgtcg
atggtcggagccgtgccctgcggatacgtgtatgttgacggctcgtccgtcggcgatatc
accgaggccgagctcaaggaccgccgcatcctctccgaggagggcttcgttgcgatcttc
gcggtcgtcgacacggcgaagcgcgccatcatctccggcccccacatccaggctcgcgcc
atggccgaggatgatgatgtgttcgagaaggtgcttccggaggtgacgaaggcgctccag
gacgtcctcgacaacgacggtgacacgtaccagatgcagcaggcgatgcgcagggcggtc
ggccgctgggtctcccgcaggctccgccgccgcccgatgatcgtccccaccgtcatcgaa
gtctga
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