Flaviflexus salsibiostraticola: EJO69_02050
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Entry
EJO69_02050 CDS
T05752
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fsl
Flaviflexus salsibiostraticola
Pathway
fsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJO69_02050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsl03019
]
EJO69_02050
03009 Ribosome biogenesis [BR:
fsl03009
]
EJO69_02050
Enzymes [BR:
fsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJO69_02050
Messenger RNA biogenesis [BR:
fsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJO69_02050
Ribosome biogenesis [BR:
fsl03009
]
Prokaryotic type
rRNA helicases
EJO69_02050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Cas3-like_C_2
Flavi_DEAD
adh_short
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZN29215
UniProt:
A0A3S8Z6W3
LinkDB
All DBs
Position
complement(430284..432173)
Genome browser
AA seq
629 aa
AA seq
DB search
MRKTMADTPELNTPEIEAEEITAPGFAELGLPDDLLDAVQKLGFTTPTAIQEQTIPTLLS
GRDVVGVAQTGTGKTAAFGLPLLAQIDPAKRRVQSIVLAPTRELAMQVADAIKDFAAVSR
DIDVVAVYGGSSYVPQIRALERGAQVVVGTPGRVMDLIAKGALDLSRVSYFVLDEADEML
RMGFAEDVEKIAESLPTENRVTALFSATMPPQIRRVAEHHMTNPKHISVSNPRSVVSTVK
QTFAVVPSRHKIGGLARVLATTEADAAIVFVRTRASAEELALELNARGVQAAALSGDVAQ
RDREKLVNRLREGFLDVLVATDVAARGLDVERIGLVINFDIPKEIDTYVHRIGRTGRAGR
EGVALSFVTPRERARLRKIEQATKANMEEVELPSPAEVSKLRADRLLKEAVERHAAGRLS
VYRETLAAFKAAQEAGETDMSVDDLVYALLALGVRDPGPQANDEPDRITVRDERGDRQDR
DRGERRERGSMSGSRRYRVEVGHRDGVKPGAIVGAITGEGGLRGSDLGKIDIYPSFSLVE
IIGELSSDATSRIYDAEVSGRALKIRLDEGPRGGGDRGGHRSDRGGYRSDRGGYRSDRGD
RMSGGERFKRGGDRFDKRRTAAPKRRRDY
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagacaatggcggatacgcctgaactgaacacccccgaaatcgaagctgaagag
attactgcgccgggctttgccgagctcggcctacccgatgacctgctcgacgcggtccag
aagttgggcttcaccacccccaccgcgattcaggagcagaccattccgacgcttctcagc
ggccgcgacgtcgtcggcgtcgcccagacaggcacgggtaagacggccgcgttcggcctc
cccctgcttgcgcagatcgacccggccaagcgccgcgtccagtcgatcgtcctcgccccc
acccgtgagcttgccatgcaggtcgcggacgcgatcaaggatttcgcggccgtgtcccgc
gacatcgacgtcgtcgccgtgtacggcggctcctcctacgttccgcagatccgcgccctc
gagcgcggcgcacaggttgtcgtcggcaccccgggccgcgtcatggacctcatcgccaag
ggcgccctcgatctctcccgcgtctcctacttcgtcctcgatgaggccgatgagatgctc
cgcatgggcttcgccgaggatgtcgagaagatcgccgaatcgctgccgaccgagaaccgc
gtgaccgcgctcttctcggcgacgatgccgccgcagatccgccgggtcgccgagcaccac
atgacgaacccgaagcacatctccgtctcgaacccgcgctcggtcgtctccaccgtcaag
cagaccttcgcggtcgtgccctcccgccacaagatcggcggactcgcccgcgtcctcgcg
acgacggaggcggatgcggcgatcgtcttcgtccgcacccgcgcctcagccgaggagctc
gccctcgagctcaacgcccgcggcgtccaggccgccgccctgtcgggtgatgtcgcgcag
cgtgaccgcgagaagctcgtcaaccgcctccgcgagggcttcctcgacgttctcgtcgcc
accgacgtggccgcccgcggcctcgacgtcgagcggatcggactcgtcatcaacttcgat
atcccgaaggagatcgacacctacgtccacaggatcggccgtaccggccgcgccggccgt
gaaggcgtcgccctctcgttcgtcactccccgtgagcgtgcacgcctgcgcaagatcgag
caggccacgaaggcgaacatggaagaggtcgagctcccctcgcccgccgaggtgtcgaag
ctccgcgccgataggcttctcaaggaggccgtcgagcgccacgccgccggcaggctctcc
gtctaccgcgagaccctcgcggccttcaaggcggcccaagaggccggcgagaccgacatg
tcggtcgatgaccttgtctatgctcttctcgcgctcggcgttcgcgaccccgggccgcag
gccaatgacgagccggaccgcatcaccgtccgcgacgagcgcggggaccgccaggaccgg
gatcgcggcgaacgccgtgagcgcggctccatgtccggttcacgccgctaccgcgtcgag
gtcggccaccgcgacggcgtcaagccaggcgcgatcgtcggtgcgatcacaggcgagggc
gggcttcgcggctcggacctcggcaagatcgacatctacccctccttctccctcgtcgag
atcatcggcgagctctcctccgatgcgaccagccgcatctacgacgccgaggtctccggc
cgtgccctcaagatccgtcttgacgagggaccccgtggcggcggcgaccgtggcggtcat
cgcagcgaccgtggcggctaccgcagcgatcgcggtggataccgaagcgatcgtggtgac
cgcatgagcggtggagagagattcaagcgtgggggtgaccgtttcgacaagcgtcggacc
gcagctcccaagcgtcgccgagactactga
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