Flaviflexus salsibiostraticola: EJO69_04035
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Entry
EJO69_04035 CDS
T05752
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fsl
Flaviflexus salsibiostraticola
Pathway
fsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJO69_04035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsl03019
]
EJO69_04035
03009 Ribosome biogenesis [BR:
fsl03009
]
EJO69_04035
Enzymes [BR:
fsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EJO69_04035
Messenger RNA biogenesis [BR:
fsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJO69_04035
Ribosome biogenesis [BR:
fsl03009
]
Prokaryotic type
rRNA processing factors
EJO69_04035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AZN31044
UniProt:
A0A3S8ZC43
LinkDB
All DBs
Position
complement(846736..849246)
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AA seq
836 aa
AA seq
DB search
MPATYLLFQEPDPTRVVRRPVKKQEDRDSRRDVDNRDDDRRDDDRRTDDRREDDEERKPR
RRGSRGRGKAADQTDQPDESPKTEQGGDDETPTRTRSRQSQPRRAERSGDDEQTVSQAED
SEDDESSSGTVTRRRRRRRSTSSEEVTALKGSTRLEAKRQRRRDGREAGRRRQSITESEF
LARREAVARTMLVREQDGLNQIAVLEDDILVEHYVARHTQVSMVGNVYLGRVQNVLPSME
AAFVDIGKGRNAVLYAGEVNWEAAGLEGKPRRIESALKSGETVLVQVTKDPIGHKGARLT
AQITLAGRHLVLVPSGAMTGISRKLPDRERQRLKKLLKEIVPAEHGVIVRTAAEGATEDQ
LRKDVERLTKKWDEIQAKVTSAKSAPVLLKGEPELAVRVVRDVFNEDFESLHIQGTNTYK
TISEYVHELSPELDDRVHKWVQNKDIFSEARVDEQLAKAMDRKVYLPSGGSLVIDRTEAM
TVVDVNTGRFTGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL
VLRRLIECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLTEAFSSTCEHCSGRGYLIHSHP
VEKGDSAPKQTKPARQAAAPAPEPDEDDSKREEVKSALASIAAAAQHHRDEEIEEKPAPK
RGSRQNRRGDGRQSAQKKAGSATEDAAPTKKAGSATEGAAPTKKAEAAAEVEAPTKKAVQ
SGRVSGRITPGTSAEPSAAKVERVEPAPAPVQERKSRRVASSGTIVTKTSGSAIIVAPKS
ETPVKKAEPKRAPVQQPKPVEVKPEDDARKTRRAVSSGTIIPKASTAPGIMTFPVK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccacctaccttctcttccaggagcccgacccgacgagggtcgttcggcgcccg
gtcaagaagcaggaggatcgcgacagccgccgcgacgtcgataaccgcgatgatgatcgg
cgcgatgacgatcgccgcaccgacgatcgacgcgaggacgatgaggagcgcaagccgcgc
aggcgaggctctcgtgggcgcggcaaggctgccgatcagactgatcagcccgatgagagc
ccgaagacggagcagggcggcgacgacgagaccccgacccggacccggtcgagacagtcg
cagccgcgcagggccgagcgttcgggagacgatgagcagaccgtttcgcaggccgaggac
tctgaggatgatgagtcctcatctgggacggtcacccgtcgtcgccgccgccgccgctca
acctcctccgaggaggtgacggcgctcaagggctccacccgcctcgaggcgaagcgtcag
cgacgcagggatggccgcgaagccggccgtcgcaggcagtcgatcaccgagtccgagttc
ctcgcacgccgcgaggccgtcgcccgcacgatgctggtgcgtgagcaggatgggctcaat
cagatcgccgtcctcgaggatgacattcttgttgagcactacgtcgcccgccacacccag
gtgtcgatggtcggcaacgtctacctcggacgggtgcagaacgttctgccgtcgatggag
gccgccttcgtcgatatcggcaagggccgcaatgctgttctctacgcgggtgaggtcaac
tgggaggccgccggtctcgagggtaagccgcgccggatcgaatctgccctgaagtcggga
gagacggtcctcgtccaggtcacgaaggatccgatcggccacaagggtgcgcgcctcacc
gcgcagatcaccctcgccggacgccaccttgtcctcgtgccatcgggcgccatgaccggc
atctcccgcaagcttccggatcgtgagcgccagcggctgaagaagctcctcaaggagatc
gtccccgccgagcacggcgtcatcgtccgcacggccgccgagggcgcgacagaggatcag
ctgcgcaaggacgtcgagcgcctcaccaagaagtgggacgagatccaggccaaggtcacg
tctgccaagagcgctcccgttctcctcaagggcgagcccgagctcgcagtccgcgtcgtc
cgcgacgtgttcaacgaggacttcgaatccctccacatccaggggacgaacacgtacaag
acgatctccgagtacgtccacgagctctcccccgagctcgacgaccgggtccacaagtgg
gtccagaacaaggacatcttctcggaggcacgtgtcgacgagcagctggcgaaggcgatg
gaccgcaaggtctacctgccctccggcggctcacttgtcattgaccgcaccgaggccatg
accgtcgtcgacgtcaacacgggccggttcacaggttcgggcggcacgctcgaggagacg
gtgacgaagaacaacctcgaggccgccgaggagatcgtccgacagctgcgccttcgcgac
atcggcggcatcatcgtcatcgacttcatcgacatggtcctcgagtcgaatcgcgacctc
gtgctgcgcaggctgatcgagtgcctgggacgggatcgcacccgtcatcaggtcgccgag
gtcacctcgctcggcctcgtgcagatgacccgcaagcgagtcggtcagggcctcacagag
gcgttctcctcgacctgtgagcactgcagcggccgcggatacctcatccactcccatccg
gtcgagaagggcgattccgctcccaagcagacgaagcccgcacgccaggcggcagcgccc
gctcccgaacccgacgaggacgactcgaagcgcgaggaggtcaagtcggccctcgcgtcg
atcgccgccgctgcgcagcatcatcgcgatgaggagatcgaggagaagcccgctcccaag
cgggggtcgaggcagaaccgtcgaggcgacggccgccagtccgcacagaagaaggccggc
tctgcgaccgaggacgcggctccgaccaagaaggccggctctgcgactgagggcgcggct
ccgaccaagaaggctgaggcggcggctgaggtcgaggcgccgacgaagaaggctgttcag
tccggcagggtgagcggcaggatcacgccgggcacgtccgcagagccttccgccgcgaag
gtggagagggtggaacctgcccctgctccggtgcaggagcggaagtcgcggcgcgtcgcg
tcctcaggcaccatcgtcacaaagacctcgggcagcgccatcatcgtcgcaccgaagtcg
gagacgccggtgaagaaggccgagccgaagcgtgcgcccgtccagcagccgaagccggtc
gaggtcaagccggaggatgatgcccggaagacccgcagggcggtttcgtccggcacgatc
atcccgaaggccagcacggcccccggcatcatgaccttcccggtcaagtag
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