Flaviflexus salsibiostraticola: EJO69_08655
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Entry
EJO69_08655 CDS
T05752
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
fsl
Flaviflexus salsibiostraticola
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsl03019
]
EJO69_08655 (hrpB)
Enzymes [BR:
fsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EJO69_08655 (hrpB)
Messenger RNA biogenesis [BR:
fsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EJO69_08655 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
CON_HrpB
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZN31129
UniProt:
A0A3S8ZCC2
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All DBs
Position
1873364..1875742
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AA seq
792 aa
AA seq
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MFELDLPVGAALPELGRAMEDVGAAVLSAPPGSGKTTLVPPYLASITEGTILVSQPRRMA
ARAAARRLAGLLGEKVGESVGYSVRGDTKRSRATRIEFVTAGVLLRRILADPDLDGVGAV
VLDEVHERHLDSDLSAALLLDIRDLTGLRLVAMSATLAADVWARLLDAPIVEAHARTFPV
DVLHRPGPAPLGVRGVERDFLAHVAAEVRLAADEQEGSVLVFLPGRREIETVAGMLDRRV
RVLHGSVPAREQDEILAGGPQQQIVLATSIAESSLTVPGVTQVVDSGLAREPRTRYQSGI
TGLVTVFESKAGAAQRAGRAGRLGPGTARILMSQTSWSRLADYPEPEIRTADLTDFLLSA
LRWGDPSDLRLPDPPPEPALRSAEQILRRLGAIDGGITEFGRRISAIPAHPRTSVALLRL
YDRIGTRRAAEIIALLEEDQPVPGADLAAAWRDMVRRPTPSWRQSVRRLSGLVPDAAGSP
VTADEAVGEVVAAAYPDRIAVLRSGTYLTAAGTGAVLPQGSPLTGSEWLAIADLADSGRA
DAMIRSAIPISRDLASDMGGIEETLHEIAGRRVRAWRVRRLGAIELNRWPADIDPDAARP
LLIRSLPDLLSWSDSALHLRQRLDFLHRTLGAPWPDVSDEGLSDRAEEWLGPELDRWSRG
GAIQADLVDCLRRLLPWPEAVDLERLAPARIESPAGGTAKIHYDAEKPYSAMKVQECFGW
QDSPLLAGGVRLQIQLLSPAARPLAVTDDLASFWRGAYSQVRAENRGRYPKHPWPEDPLS
ATPTRKTTRRAT
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagttggatctgccggtcggtgcagccctacccgagttggggcgggcgatggag
gatgtcggtgcggctgtgctgtccgcacctcccggctccggcaagaccaccctcgttccg
ccctacctcgcgtcgatcaccgagggtaccattctcgtgtcccagccgcgccgcatggcg
gcgcgggcggccgcacggcgcctcgcgggccttctcggagagaaggtgggtgagagcgtc
ggctactccgtccgcggcgacacgaagaggtcccgcgccacccgcatcgaattcgtcacc
gctggtgtcctcctgaggaggatcctggccgatccggacctggatggcgtcggagcggtc
gtgctcgacgaggtccatgaacggcacctcgactcggatctctcggcggcgcttctcctc
gacatccgggatctgacgggactgcggctcgtcgccatgtccgcaaccctcgccgccgat
gtgtgggcgcggctgctcgacgcccccatcgtcgaggcccacgcacggacctttcccgtc
gacgtgctccaccggccgggacctgcacctctcggcgtgcggggagtggagcgggacttc
ctcgcccacgtcgccgccgaggtccggttggcggccgatgagcaggaggggagcgtcctc
gtcttcctcccgggccgccgcgagatcgagaccgtcgcgggcatgctcgaccgtcgcgtc
agggttctccacggttcggtgccggcgcgggagcaggacgagatcctggccggcggccca
cagcagcagatcgtcctcgccacctcgatcgccgaatcctcgctcaccgtcccgggcgtc
acgcaggtcgtcgacagcgggttggcccgagagccccgcacccgctaccagtcggggatc
accggcctcgtcaccgtcttcgaatcgaaggccggagctgctcagcgtgcgggccgtgcc
ggtcgtctcgggccgggcacggcccggatcctcatgagccaaacaagctggtcgcggctt
gccgactatcccgaaccggagatccgcacggccgacctcacggatttcctcctctccgcg
ctgcggtggggagatcccagcgatctgcggctgcccgatcctcccccggagccggcactc
cgctccgcggagcagatccttcggcgcttgggcgcgatcgacggcgggatcaccgagttc
ggtcggcgcatctccgccatccccgcccacccccgcacgtccgtagccctgctgcggctc
tacgaccggatcggcactcggcgggcggcggagatcatcgccctcctcgaggaggatcag
cccgtgcccggcgcggacctggccgccgcgtggcgggacatggtccgccgccccacgccg
tcgtggcgccagtcggtcaggcgcctgtcggggctcgtcccggacgctgccggatcgcca
gtgacggccgatgaggcggtcggcgaggtcgtggccgccgcctaccctgacaggattgcc
gtgctccggtcgggcacgtatctcacagctgccgggacgggtgctgttctgccgcagggg
tcgccgctcacgggatcggagtggctggcgattgccgatctcgccgattcggggcgggcg
gatgcgatgatccgctccgccatccccatcagccgcgacctcgcctcggatatgggcggg
atcgaggagacactccacgagatcgcgggacggcgcgtgcgagcctggcgggtgcgccgc
ctcggagcgatcgaactcaaccgctggccggccgacatcgaccccgacgcggcccgcccc
ctcctcatccgctccctgccggacctgctctcctggtcggacagcgctctccacctgcgc
cagcggctcgacttcctccaccgcactctcggagcgccgtggccggacgtgagtgacgag
gggctgtccgaccgtgcggaggaatggctcggcccggagctcgaccgatggagcaggggc
ggtgcgatccaggcggatctggtcgactgcctgcgacgcctcctgccgtggccggaggcg
gttgaccttgagagacttgcgcccgcacggattgaatcgcccgccggcggcaccgcgaag
atccactacgacgccgagaagccgtattcggcgatgaaggtgcaggagtgctttgggtgg
caggactcgcccctgctcgccgggggagtccggctccagatccagctgctctcgcctgcc
gcccggccccttgctgtcaccgacgatctggcctcgttctggcgcggcgcctattctcag
gtgagggccgagaaccggggccgctatccgaagcatccctggccagaggacccgctgagc
gcgacgccgacgaggaagacgacgaggagggccacgtga
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