Candidatus Fukatsuia symbiotica: CCS41_03880
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Entry
CCS41_03880 CDS
T06003
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fsm
Candidatus Fukatsuia symbiotica
Pathway
fsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCS41_03880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsm03019
]
CCS41_03880
Enzymes [BR:
fsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCS41_03880
Messenger RNA biogenesis [BR:
fsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCS41_03880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
Shikimate_DH
UvrD-helicase
Helicase_RecD
Cas3-like_C_2
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWK13807
UniProt:
A0A2U8I3U7
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All DBs
Position
809574..810797
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AA seq
407 aa
AA seq
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MSFDSLGLNANILDAVTKQGYLVPTPIQQQAIPVVLAGCDLMACAQTGTGKTAAFTLPVL
QLLSHNQSPIKGRRPVRALILTPTRELAAQVAENVRDYSQCLKLRSLVVFGGVNINPQMM
KLRGGVDILIATPGRLLDLEQKNAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPTK
RQNLLFSATFSNEIKLLTNKLLHNPASVEVAPRNTASERIKQSVHFVDKNRKRQLLSYMI
GSQNWQQVLVFNRTKHGANHLAEQLNKDGITTAAIHGNKSQGARTRALADFKNGEIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRADCTGEAISLVCVDEHKLLRDV
ERLLKCEIPRITIEGYQPDPTIKAAPIQNGRQGRSSTSRPSKKRRVV
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcttaaacgctaatatcctggatgctgttaccaaacaaggc
tatcttgtgccaacgccaattcaacagcaggccatccccgtggtattggcggggtgtgat
ttaatggcctgtgcgcaaacaggtacgggaaaaacggcagcttttaccctgccggtgctg
caattgctgagtcataatcagtctccaattaagggacgtcgtccagtgcgtgcacttatc
cttacgccaacacgtgaattagcggcacaggttgctgaaaatgtaagagattacagtcaa
tgtcttaaactgcgttcgttggtggtctttggtggcgttaatatcaatcctcagatgatg
aaattacgtggtggtgttgatattttaatcgctactccaggtcgtttattggacttggaa
cagaaaaatgctgtcgatttatcaaaagttgaaatattggtgttagatgaagctgaccgt
atgctagatatgggttttattcatgatatccgccgagtgttagctaaattgccaacaaaa
cgccaaaatttgctattttctgcaacattttcaaatgaaataaagttattaaccaataaa
ttattacataatccagcttctgttgaagtagctccacgtaatactgcttctgagcggatc
aagcagagcgtccattttgtggataaaaaccgtaaacggcaactgctttcttatatgatc
ggtagtcagaattggcagcaagtattagtgtttaatcgtactaaacatggcgctaatcat
ttggccgagcaattgaataaggacggtattactaccgctgctattcatgggaataagagc
caaggtgcccgcacacgtgcactggctgattttaaaaatggtgaaattcgcgtgctagta
gcaacagatattgctgctcgagggttggatatcgatcaattgcctcatgttgttaactat
gagctgccaaacgtacctgaagattatgtgcatcgtattggtcgtactgggcgtgcagat
tgtaccggcgaagctatttctttggtctgtgtcgatgagcataaattattgcgagatgtt
gaacgtttactcaaatgtgagatcccacgtatcactattgaaggttatcagccagatcca
acaattaaagctgctccgattcaaaatggacgccaagggcgtagcagcacctcacgcccg
agtaaaaagcggcgtgtggtgtaa
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