Candidatus Fukatsuia symbiotica: CCS41_07310
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Entry
CCS41_07310 CDS
T06003
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fsm
Candidatus Fukatsuia symbiotica
Pathway
fsm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fsm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CCS41_07310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsm03021
]
CCS41_07310
Transcription machinery [BR:
fsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCS41_07310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AWK14322
UniProt:
A0A2U8I5B1
LinkDB
All DBs
Position
complement(1494715..1496556)
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSEQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAVEAAAQVLSSVEAEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVAEYPEAITYLLEQYDRVAADQARLSDLITGFVDPNAQEDIAPTA
THVGSELSAEEMVDNDESDEDNDDDAETDNSVDPELAQEKFSELREQYENTRKEIKKNGR
NHADTAAEILKLSEIFKHFRLVPRQFDYLVNNMRSMMDRVRTQERIIMKLCVDQCEMPKK
IFVTLFVNNETDETWFENALEMGKSWSKKLHNVADEVKRNLQKLRHIEEETSLTIEQAKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTVQELPLGSATSESL
RSATHDILAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctaaagctacttgtcacccgtggtaaggagcaaggc
tatttgacctatgctgaggtcaatgaccatctgccggaagacatcgtcgattccgaacag
attgaagatatcatccagatgattaatgacatgggcatacaagtgctggaagaagcacct
gatgctgatgatttgatgttagccgaaaataccactgacaccgatgatgacgccgtagaa
gcggcggcacaggtgttatccagtgttgaagctgaaattgggcgaacaaccgatcccgta
cgcatgtatatgcgtgaaatgggcactgttgaactcctgacacgagaaggcgagattgat
attgccaaacgtattgaagaagggatcaatcaggtacagtgttcagttgctgagtaccct
gaagctattacttatctgttagagcagtatgaccgtgttgccgcggatcaagcccgactg
tccgatctgataaccggctttgtcgatcctaacgcacaagaagatattgcaccgaccgcc
acccatgttggttctgaattatccgctgaagaaatggtggataacgacgagagtgatgaa
gacaatgacgatgatgctgaaaccgataacagtgttgatcccgagttggcacaggaaaaa
ttcagcgaactgcgtgaacaatatgaaaatactaggaaagaaattaaaaagaatggtcgt
aaccacgccgatactgccgctgagatcctgaaactttcagaaatatttaaacatttccgg
ctagtaccgaggcaatttgactatctggtcaacaatatgcgttcaatgatggatcgcgtt
cgtacccaggaacgtatcatcatgaaactctgtgttgaccagtgcgaaatgccaaagaaa
atcttcgttaccctgtttgttaataacgaaaccgatgagacctggttcgaaaatgccttg
gaaatgggtaaaagctggtctaaaaaattgcacaacgttgccgatgaggtaaaacgtaac
ctgcaaaaattacgccatatcgaagaagaaaccagtttgaccatcgaacaggctaaagac
atcaaccgccgtatgtcgatcggtgaagccaaagcacggcgtgcgaaaaaagaaatggta
gaggctaatttacgtttggtgatctcaattgctaaaaagtataccaatcgtggcttacag
ttccttgatctgattcaagaaggcaacattggtttaatgaaagcggttgacaaatttgaa
tatcgccgtggttataaattttctacttacgctacctggtggatccgtcaagcgattacc
cgttcgattgctgatcaagcgcgtaccatccgtatcccagtgcatatgattgaaaccatt
aacaaactcaatcgtatctcacgccagatgctacaggaaatgggacgagagccaacacca
gaggaattagcagaacgcatgctaatgccagaagataaaatccgcaaggtgctgaaaatc
gccaaagaaccgatctcaatggaaaccccgatcggcgacgatgaagattcacatttgggt
gattttatcgaagataccgtgcaagagttaccgctcggatcggcgacttccgaaagtttg
cgttcagcgactcatgacatactggcaggtcttactgcccgtgaagcaaaagtgctgcgt
atgcgttttggtatcgatatgaacactgaccataccttagaggaagtgggcaaacagttt
gatgttacccgtgaacgtatccgccagattgaagccaaagcattgcgtaaactgcgtcat
ccaagccgttccgaggtgctacgtagttttctcgatgattaa
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