Candidatus Fukatsuia symbiotica: CCS41_11390
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Entry
CCS41_11390 CDS
T06003
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
fsm
Candidatus Fukatsuia symbiotica
Pathway
fsm02020
Two-component system
fsm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fsm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CCS41_11390
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CCS41_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsm03021
]
CCS41_11390
Transcription machinery [BR:
fsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCS41_11390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AWK14937
UniProt:
A0A2U8I754
LinkDB
All DBs
Position
complement(2374687..2376120)
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLGQQLAMTPQLQQAIRLLQLSTLELQQEVQQMLESNPLLEQTDIHQEIDTKE
IIDSIDQDTCEALEQNEIPEELPLDTTWDEIYTANTPSSMRNDYSDDDLPVYQGETTQSL
QDYLMWQVALTPFSDTDTAIATSIVDAVDETGYLTVPLEDVLESTGNPELTLDEVEVVLK
RMQHFDPIGVAARDLRECLSVQLSQYAKDTPYLIEARLIVSNYLDLLGNRDFRTMIRLSR
LKEQVLKEAIALIQSLDPRPGQSISSSTSEYVIPDIIVRKEGNSWAVELNADSLPRLKIN
QHYAAMSGSVLNDNDNQFIRSNLQEARWLIKSLESRHETLLKVARCIVDQQIEFFENGEE
FMKPMVLADIAHTVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTESGGEASSTAI
RALVKKLVAAEDPAKPLSDSKLTLSLCEQGIIVARRTVAKYRESLSIPPSNQRKQLI
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactccgtctcggccagcaattggcgatgaccccacaactccaa
caggcaatccgtctgttgcagctttcgacgcttgaactgcaacaagaagtacaacagatg
ttggaaagcaatcctctgctagagcaaaccgatattcatcaggaaattgacacaaaagaa
attatcgattctatcgatcaggatacgtgcgaagcgctagaacaaaatgagatacccgaa
gaattgccgctagatacaacctgggacgaaatttacaccgccaacaccccgtcgagcatg
cgtaatgactacagtgatgatgatttgcccgtttatcaaggggaaaccactcaaagcctg
caagattacctcatgtggcaggtggctttaacccctttttcagacaccgataccgccatc
gccacctctattgttgatgcggtagacgaaaccggataccttaccgtaccactggaggat
gtgcttgaaagtaccggaaatcccgaactgaccctcgatgaagtggaagtcgtgttaaaa
aggatgcaacattttgatcctattggtgttgcggcacgtgatttacgtgagtgtttatcc
gtacagctctcgcagtacgccaaagacacgccttatctgatcgaagcgcgtttaatcgtc
agcaattatctcgatttattgggtaatcgcgatttccgtaccatgatccgtttaagtcga
ctaaaagaacaggtacttaaagaagccatcgccctgatccaatcgttggatccacgtcca
gggcagtcgattagtagcagcacatctgagtatgtgatcccagatattatcgtacgtaaa
gagggtaatagctgggcggtggagttgaatgctgatagtttgccacgcttaaaaatcaat
cagcattatgctgctatgagtggcagtgtacttaacgataacgataatcagtttattcgt
agtaatctacaagaggcaagatggttgataaaaagtttagaaagccgccatgaaacgtta
ttgaaagtcgctcgttgtattgtcgatcaacagattgaattttttgaaaacggtgaagaa
ttcatgaaaccaatggtgctggctgatatcgcccataccgtggatatgcatgaatcaacg
atatcccgtgttaccactcaaaaatttcttcacagccctcgaggtatttttgagttaaag
tacttcttctccagtcacgtgaataccgaaagtggaggtgaagcctcttctacggcaatt
cgagcgttggtgaaaaagttggtagcggcagaggatcctgccaagccactcagtgacagt
aaattaaccctgtcgctatgtgaacagggtattatcgtggctcggcgcactgttgcaaaa
tatagagaatcattatccatacccccgtcaaatcaacgtaaacaattgatttaa
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