Flavobacterium sangjuense: GS03_00004
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Entry
GS03_00004 CDS
T06656
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fsn
Flavobacterium sangjuense
Pathway
fsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS03_00004 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsn03019
]
GS03_00004 (rny)
Messenger RNA biogenesis [BR:
fsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GS03_00004 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
HTH_37
KH-I_KHDC4-BBP
UPF0154
Motif
Other DBs
NCBI-ProteinID:
QBZ96532
UniProt:
A0A4P7PR55
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Position
2599..4161
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AA seq
520 aa
AA seq
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MGTILIIIALIAGIAGGFGIAKFMEKNNISNMVKNAKKEAASILKDANLEGENIKKDKLL
QAKEKFLELKSEHEQEILNKDKRIAEIEKRTRDKESQVSSELAKAKKVNDDFEAKTAEYN
SKIEVLDKKQQELEKLHKSQVQQLEVISGLSAEDAKEQLVESLKAEAKTKAMSHIQDTIE
EAKLTAQQEAKKVIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAAT
GVEIIVDDTPEAIILSCFDPVRREIARLSLHKLVTDGRIHPARIEEVVAKTTKQIEEEIA
EVGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVKL
AKRAGLLHDIGKVPDAESDLPHALLGMQWAEKFGEKEEVCNAIGAHHDEIEMKYLISPII
QVCDAISGARPGARRQVLDSYIQRLKDLENIAFGFNGVKNAYAIQAGRELRVIVESEKVS
DENAASLSFEISQKIQTEMTYPGQVKITVIRETRAVNIAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggaactatactaattataattgcgctgatagcgggaattgccggaggttttggaatt
gcgaaattcatggaaaaaaacaacatctccaatatggttaaaaatgccaaaaaagaagca
gcatcgattttaaaagatgccaatcttgaaggcgaaaatatcaagaaagacaagttatta
caggcaaaagaaaagtttttggaattaaaatcagagcatgagcaagagattttaaataaa
gacaaaagaattgccgaaatagagaaaagaacacgtgataaagaatcacaggtttcaagt
gaattggctaaagccaaaaaagtaaacgacgattttgaagctaaaacagcggaatacaac
tcaaaaattgaagtcttagacaagaagcaacaagagcttgaaaagcttcataaaagtcag
gtgcagcaacttgaggttatctccggtctttctgctgaagatgccaaagagcaattggtt
gaaagtttaaaagcggaagccaaaacaaaagccatgtcgcatattcaggacactattgaa
gaagcaaaattaacggcgcaacaagaagcgaagaaagtcatcattaacacgattcaacgt
gttggaacggaagaagctgttgagaattgtgtttctgttttcaatattgaatcggatgac
gttaaaggaagaatcattggtcgtgaaggaagaaatatccgtgcgctggaagcagcaacc
ggagttgaaatcattgttgacgatacgccggaagctattatcctttcgtgttttgatccg
gtaagaagagaaatcgcccgattgtcattacacaaattagtaactgacggtagaattcac
cctgcaagaattgaagaagttgttgccaaaacaaccaaacaaatcgaagaagaaattgcc
gaagttggtaaacgtaccgtaattgatttaggtattcacggtttacatccggaattgatc
aaagtggtgggaagaatgaaataccgttcttcttacggacaaaatttattgcaacactca
cgtgaagtttctaaactttgtggaataatggcagctgaattaggcctgaatgtaaaatta
gcaaaacgtgccggtttactacatgatatcggaaaagtacctgatgcagaaagcgattta
ccacacgcattgttaggaatgcaatgggctgaaaaattcggagaaaaagaggaagtgtgc
aacgcaattggagcgcatcacgatgagattgaaatgaaatatttaatctctccaattatt
caggtttgtgatgctatttctggtgcaagaccaggtgcaagacgtcaggttttggattct
tatatccaaagattgaaagatttagaaaacattgcttttggatttaatggtgttaaaaac
gcttatgctattcaagccggacgtgaacttcgtgtgattgttgaaagtgaaaaagtaagc
gatgaaaacgccgccagtctttcttttgagatttcgcaaaaaatccaaaccgaaatgact
tatcctggtcaggttaaaattaccgtaatccgtgaaaccagagcagtaaatattgcgaag
taa
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