Flavobacterium sangjuense: GS03_00018
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Entry
GS03_00018 CDS
T06656
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsn
Flavobacterium sangjuense
Pathway
fsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS03_00018 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsn03019
]
GS03_00018 (srmB)
03400 DNA repair and recombination proteins [BR:
fsn03400
]
GS03_00018 (srmB)
Enzymes [BR:
fsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS03_00018 (srmB)
Messenger RNA biogenesis [BR:
fsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GS03_00018 (srmB)
DNA repair and recombination proteins [BR:
fsn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GS03_00018 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
zf-CXXC
SpmSyn_N
Motif
Other DBs
NCBI-ProteinID:
QBZ96546
UniProt:
A0A4P7PQ76
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All DBs
Position
15304..17196
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AA seq
630 aa
AA seq
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MSKALEILQQYWKHDAFREPQEEIINSVLDGKDTFALMPTGGGKSICFQVPAMMQEGICL
VISPLIALMRDQVENLQKKGIKAIALTGGIYHDDIIDLLDNCQFGNYKFLYLSPERLQND
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKIVQLKEYFPKVSFLALTASATLRVK
EDIITQLKLDNPQVFSKSFYRANIAYMVFETEDKLHLLQQILQKNPQPSIIYVTNRKSCL
ETVHQLESHGFTATYYHGGLSSKEKEKHMKLWMEEKVQVIVATNAFGMGIDKANVKTIIH
LHLPQNLENYYQEAGRAGRDGEKAFAILLNNPSDVLHAEAQFLSVLPDKPFLNLVFSKLC
SFFQIAYGEGIDEQFSFNLNQFCAKYNFPILKTYNALQFLDRQGVINLSQEFSEKVSIQF
IIPSKEVIRYMSLNPADEEIILTILRTYPGIYDMQTAFNPTLIAKKSNSTEKIVLSLLQK
LHEKQVIDLIAKNNDATITFNEVREDERTINRVSKHLEAQNKLKTEQLQAVLHYSKETKT
CKQKLLMQYFGETINEDCGVCSYCISKNKKKQNPETVSEKIIALLKMQDFNSRDIQKLTK
LSKDDVIFALQNLLENDTISIKSNNLYSLK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaagcactagaaatccttcagcaatactggaaacacgatgccttccgcgagccg
caggaggaaatcataaattcggtattggatggaaaagacacttttgcgttgatgccaacc
ggtggcggaaaatcgatttgctttcaagtgcctgctatgatgcaggaaggaatttgcctt
gtcatttcaccattgattgctttgatgcgtgaccaagtggaaaatcttcaaaaaaaagga
atcaaagctattgctttaactggtgggatttatcacgatgatattattgatttattggat
aattgccaattcgggaattataaattcttatatctttcacccgaacgattgcagaatgat
tggattttagaacggataaaaaacctgcctataaacctcatcgctattgatgaagcacac
tgtgtatcgcaatggggacatgacttccgccctgcttatttaaagattgtacaactaaaa
gaatactttccgaaagtgtcttttttggcattgaccgcttcggcaactttgagagtgaaa
gaagatattattacgcaactaaaactggacaatccacaagttttttcgaaatcattttac
agagcgaacatagcttacatggtttttgaaaccgaagataagcttcatcttttgcagcaa
attttacaaaagaacccgcaaccttccatcatatatgtaaccaacagaaaaagctgtctg
gaaaccgttcatcaattggaaagccacggttttacagcgacttattatcatggcggatta
tcttccaaagagaaagaaaagcatatgaaactttggatggaagaaaaagtacaagtcatt
gttgctaccaatgctttcggaatgggaattgacaaggccaatgtgaaaacgattatccat
ttgcatttgccacaaaatctcgaaaactattatcaggaagccggtcgcgccggaagagat
ggcgaaaaagcatttgccattctgcttaataatccatcagatgttttgcatgctgaagcg
caatttttaagtgtactgcctgataaaccttttctgaatttggttttttccaaattgtgc
agcttctttcaaattgcttatggcgaaggtattgacgaacaatttagttttaacctgaat
cagttttgtgctaaatacaattttccaatactgaaaacctataatgctttacagtttttg
gaccgacaaggtgttatcaatttgtcacaggaattctctgaaaaagtcagcattcagttt
attattccgtccaaagaagtgattcggtatatgagtctgaatcctgcagatgaagaaatc
attctcactattctccgaacgtatcccggaatttatgatatgcaaacggctttcaatccg
actttgattgccaagaaatcgaatagtactgaaaaaatagtgctttcgcttttgcaaaaa
ttacacgaaaaacaagtcatcgatttgattgccaaaaataatgatgccacgattaccttt
aatgaagttcgggaagatgagcgcaccattaacagagtatctaaacatctggaagcgcaa
aacaaattaaaaaccgaacaacttcaggcagttttacattatagtaaggaaactaaaacc
tgcaagcagaaattgctgatgcagtattttggagaaaccataaatgaagattgtggtgtt
tgctcctattgcatttccaaaaataaaaagaagcaaaatccggaaacggtttctgaaaaa
attattgccttattgaaaatgcaggacttcaactcaagagatattcaaaagttgaccaaa
ctttcgaaagacgatgttatctttgcgcttcaaaatcttttggaaaacgatacgattagt
atcaaatcaaataatttatattcattaaagtaa
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