Flavobacterium sangjuense: GS03_02298
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Entry
GS03_02298 CDS
T06656
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fsn
Flavobacterium sangjuense
Pathway
fsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS03_02298 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsn03019
]
GS03_02298 (rhlE_2)
Enzymes [BR:
fsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GS03_02298 (rhlE_2)
Messenger RNA biogenesis [BR:
fsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GS03_02298 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UvrD_C
ERCC3_RAD25_C
Cas3-like_C_2
AAA_19
CMS1
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QBZ98787
UniProt:
A0A4P7PUY2
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All DBs
Position
2613727..2614983
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AA seq
418 aa
AA seq
DB search
MLFEDLSLSNSIQRAVFEEGYTSPTPIQEKAIPFILAGKDLVGCAQTGTGKTAAFAIPII
HNLHRMIGSSKKTKQIRCLVVTPTRELAVQIGESFDTYGKYTNLRQLTVFGGVSQVPQVD
QLKKGVDILIATPGRLLDLHKQGFIDFDHLHYLVLDESDLMLDMGFINDVRKIVKLVPTN
RQTLLFSATMPMAIRELADTFLNKPEYVSVTPVSSTAEIIEQQIYFVDKTDKRALLYHLI
RNENLSNVLVFVRTKHGADNVVKALKKHGVNSEAIHGDKSQTARQRVLDHFKNKEISVLV
ATDIAARGIDIESLPYVINFDLPNIPETYVHRIGRTGRAGNGGISISFCSKDEEPYWKDI
QKLIKVNVKTIKDHPYPWKDEVPNPDAKPDLRNKKKPEGKENNSRKSEASKKNKKRWY
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcattatccaacagtattcagagagcagtctttgaagaagga
tacaccagcccaacgcctattcaggaaaaggctattccatttattttagcaggaaaagat
ttagttggctgcgcccaaaccggtaccggaaaaacggcagcttttgctattcccatcata
cacaatttgcatcgcatgattgggtcgtccaaaaagacaaaacaaattcgttgtcttgta
gtgacaccaacacgtgagttggcggtacaaattggcgaaagttttgacacgtatgggaag
tacactaacctgagacaattaactgtttttggtggcgtttcgcaagtgccacaagttgac
cagttaaaaaaaggcgttgacattttgattgcaactccgggaagattattggatttgcac
aaacaaggttttatcgattttgaccatttgcattatttggttttagatgaatcggatttg
atgctcgatatgggttttattaacgatgttagaaaaattgtaaaattggttccaaccaac
agacagactttattgttttcggcaacgatgccaatggcaatccgtgagttagctgatact
tttttaaacaaacccgaatatgtttcggtaacaccggtttcctctacggcagaaattatt
gaacagcaaatctattttgtggataagacagacaaacgtgctttgttatatcatttgata
cgcaatgaaaacctgagcaatgtattggtttttgttcgtaccaaacatggcgctgacaat
gtagttaaagcattaaaaaagcatggcgttaattcagaagcgattcacggagacaaatca
cagacggcaagacaacgcgttttagatcattttaagaacaaggaaatctctgttttggtt
gccaccgatattgcggcacgtggtattgacattgaaagtttaccgtatgtaatcaatttt
gatttgcctaacattcctgagacgtatgtacaccgaattggtagaacgggtcgcgccgga
aatggtggaatctcgatttcattttgcagtaaagatgaagaaccatactggaaagacatt
cagaaattgatcaaagtaaatgtaaaaaccatcaaggatcatccatatccatggaaggat
gaagttccgaatccggatgcaaaacccgatttgagaaacaaaaagaaacctgaaggaaag
gaaaacaattcgagaaaatcggaagcttctaaaaaaaataaaaaacgctggtattaa
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