Candidatus Fokinia solitaria: Fsol_00009
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Entry
Fsol_00009 CDS
T05415
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fso
Candidatus Fokinia solitaria
Pathway
fso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fsol_00009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fso03021
]
Fsol_00009
03019 Messenger RNA biogenesis [BR:
fso03019
]
Fsol_00009
Transcription machinery [BR:
fso03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Fsol_00009
Messenger RNA biogenesis [BR:
fso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Fsol_00009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
ATPase_2
AAA
Spore_III_AA
rpo132
ResIII
Motif
Other DBs
NCBI-ProteinID:
AWD32825
UniProt:
A0A2U8BR43
LinkDB
All DBs
Position
complement(5500..6906)
Genome browser
AA seq
468 aa
AA seq
DB search
MKNENKKMESTSSARVVKHRFARRKENEKVKIERDDHNASDYEYKDGAETYWINDIRAMD
ESQLSDLQIKIERFDRKSDEIVYIVNSLIERGAKVLACGLLDVIGEGFGFLRGCGNFSWV
KNFEEIYVPSNYIKRYSLRSGDMIVGVVKSPKRGENKNFSLANIEKVNDIPVAELKRRVN
FDDLIPVYPDTRIDMSDIEGDDLSCRIVDMISPIGFGQRALVVAPPKTGKTILMQNIINA
ISKKYHKCVVMVLLIGERPEEVTEMERFVKGEVYSSTFDEPSQNYVNLAEMVLDRAKRLV
EMGRDVVIMLDSITRLARAYNEVAPSSGRVLSGGVDSGALYRPKRFFGAARNIEDGGSLT
IIGTTLVDTGSKMDDVIFEEFKGTGNSEIVLSRRLADKRIFPAMDIFKSGTRKEELLIDA
QSLKKIWVLRKILSDMNPEEVIELLRERMKNTSGNAEFFANMITNKMQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgaaaataaaaaaatggaaagtacttcttctgcaagagttgtgaagcataga
tttgcaagaagaaaagaaaatgaaaaagtaaaaatcgaaagagatgatcacaatgcttcg
gattatgaatataaagatggagcagaaacgtactggattaacgatataagagcgatggat
gaatcgcagttatcagatctgcaaataaaaatagaaagatttgatagaaaatcagatgaa
atcgtctacattgtgaattctttaatagaaagaggagcaaaagttttagcttgcggctta
ttggatgttataggcgaaggatttggatttctaagaggatgcggaaatttttcttgggtt
aaaaactttgaagagatttatgtgccatcgaattatataaaaagatattctcttagaagt
ggagatatgatcgttggagtagtgaaatctcctaaaagaggcgagaataagaatttttca
cttgctaatatagagaaagtgaatgatataccagttgcagagttgaagcgaagagttaat
tttgacgatttgatccccgtttatcctgatacaaggatagatatgagtgacattgaagga
gatgatctgagttgtagaattgtggatatgattagtccaataggatttggacaaagagct
ctcgtagtagcacctccaaagactggaaaaacgattttgatgcagaacataataaatgca
atttccaaaaagtaccataaatgtgtagtaatggtattgctaataggagaaagaccggag
gaagttactgaaatggaacgttttgtaaaaggagaggtgtacagttctacttttgatgaa
ccttctcaaaattatgtgaatctcgcagagatggtgctagatagagctaaaagattagta
gaaatgggaagagatgttgttataatgctagactcaattacaagacttgcgagagcttat
aatgaagtggcgccttcctctggtagagttcttagcggcggagtagattcaggtgcttta
tatcgccctaaacgattttttggcgctgcaagaaatatagaagacggaggatcgcttact
ataataggtacaactttagtagatactggatcaaagatggatgatgtaatatttgaagaa
tttaaaggcacaggaaattctgagatagtcttaagtagaaggttggcagacaaaagaatc
tttccagcgatggatatatttaaatctggcacgagaaaagaagaattactaatagatgcg
caaagtctgaaaaagatatgggtgctcagaaaaatattatcagatatgaatcctgaagaa
gttatagaattactgagagaaaggatgaaaaatacttcaggtaatgctgaatttttcgcc
aatatgataacaaataaaatgcaatag
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