Candidatus Fokinia solitaria: Fsol_00118
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Entry
Fsol_00118 CDS
T05415
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
fso
Candidatus Fokinia solitaria
Pathway
fso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Fsol_00118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fso03400
]
Fsol_00118
Enzymes [BR:
fso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Fsol_00118
DNA repair and recombination proteins [BR:
fso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Fsol_00118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
HHH_5
PIF1
SLFN-g3_helicase
PhoH
UvrD-helicase
AAA_24
HHH_2
ResIII
AAA
DEAD
nSTAND3
DUF4962
AAA_28
AAA_22
cobW
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AWD32927
UniProt:
A0A2U8BRG5
LinkDB
All DBs
Position
117695..119794
Genome browser
AA seq
699 aa
AA seq
DB search
MSRREVKSDSSVKMYLCSGILKGVGEQIGRKIYERFGEESLKVMEESYDRLTAISGISSR
KAKDIHDCFMKNKHEYKRVMFFQRYSITPYIASKIIQRYGANYEEVISKNPYRLAREIKG
VGFLSADRIAENFGIAKNSQERIMAGIIHVISEFGIDGSSGVSIGTLANKSAITLEVSSE
DVLSALMILLKEKQLFLYEYSFYSGGRRIESEEEIKRHLYSAEDDVQSIVMLPVYYHMEN
GIARKLVQIIRNSGKNKIQSLDIEEGLHFISTAFNVQLSDGQISAFRNIFTHKVSIITGG
PGTGKTQLIFSVIKAAKQQMSDIKIKLVAPTGKAAKRIKESSGENATTVHRLLEFDPVIS
TFRYNEENLLKCDLIVVDESSMIDIRLMNALLKAVSLDTTMVFVGDVDQLPSVGAGQVLN
DMITSNMVKVAYLEKIFRQVEHSKIVQYAHMIKNGNVPSFQAGTAVCDGGDVVFFEEELP
ANVPNTVINLLQGNMLRLLFGLEDSNEMKRQNLRYIMDNVQVISPMQKGEAGVRALNIAM
QAKLNQTQEYVKGLNYMYKVGDKVMQVENNYSKKVFNGEIGVIEGIDAQQKEIRVLFEER
GKVAYKRTELEQLSLAYAITIHKSQGSEYRAAIIPIMMQHSVMLERRLIYTALTRVKDIA
IFVGQKRAFGMGVKRANSAKRYTALRYILQSLDDGKNCQ
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtagggaggtaaaatctgattcctcagtcaaaatgtacttgtgttccggtata
ctgaaaggtgttggtgagcagattggacgaaaaatatacgagcgttttggtgaggagagt
ctgaaagtaatggaagaaagttatgatagattgacagcgatatcaggaatcagctcaaga
aaagcaaaagatatacatgattgtttcatgaaaaataagcatgaatacaaaagagtgatg
ttctttcagcgatatagtattacaccgtacatagcttctaagattattcaacggtatggc
gcaaattacgaagaagtgatttcgaaaaatccttatagattagcaagagagatcaagggt
gtaggatttttaagcgctgatcgtatagctgaaaatttcggaatcgcaaaaaattctcag
gaaaggataatggccggtattattcacgtcatatccgaatttggaattgacggttcttcc
ggagtaagtattggcactttggcgaataagagtgcgatcactttagaagtatcttctgag
gatgtgctgtcagcacttatgattttactgaaagagaagcagctcttcttatatgagtat
tcattctattctggtggtagaaggatagaaagtgaggaggaaatcaagcgtcatctatac
agtgctgaagacgatgtgcagagtattgtaatgcttcctgtgtattaccatatggaaaat
ggaatagcgcgaaaactcgtacaaattatccgtaatagtggaaagaacaaaattcaatct
ctagacatagaagaaggattacatttcatttcgactgcgtttaatgtgcagttatcagat
ggacagatcagtgcttttagaaatatattcacgcacaaagtatcaattattacaggaggg
cctggtactggtaagacgcagctaatattttctgttattaaagcagcaaaacagcagatg
tcagatataaagataaagcttgttgcgccaacaggtaaagctgcgaagagaataaaagag
tcttcaggagagaatgctaccacagttcataggttacttgaatttgatccagttattagc
actttcaggtataatgaagagaacttattgaagtgcgatctgattgtagtagatgaaagt
tcaatgatagatatcagattgatgaatgctttattaaaagcagtttcgttggatactacc
atggtttttgtaggagatgtggatcagctgccatcggtaggtgcggggcaagttctgaat
gatatgattacgtcgaatatggtgaaagttgcttacttagagaagatttttagacaagtg
gagcatagtaaaatagtgcaatatgcacatatgattaaaaatggcaatgtacctagcttt
caagcaggtactgcagtatgtgacggcggtgatgtagtattttttgaagaagagttaccg
gcaaatgtccctaatactgtgatcaatttgcttcaaggaaatatgcttcgtcttttattt
ggattagaggatagtaatgagatgaaacggcaaaatctcagatacattatggataatgtg
caagtgatatcgccaatgcaaaaaggagaagcaggagtgcgcgcattgaacattgctatg
caagcaaagttgaatcaaacgcaagagtatgtgaaagggctgaattatatgtacaaagtt
ggagataaagtaatgcaggtggagaataactatagtaaaaaagtcttcaatggcgaaata
ggagtaatcgaagggatagatgcacaacaaaaagaaattcgcgtactattcgaagaaagg
ggaaaagttgcttacaaaagaacagaattggagcaactgagtcttgcatatgctattacg
atccataaatctcaaggttctgagtacagagcagcaatcatacctatcatgatgcaacat
agtgtgatgcttgagagaaggctgatatataccgcgcttactagggtaaaggatatagca
attttcgtagggcagaaacgcgcatttgggatgggagtaaaacgcgcaaattcggcaaaa
aggtatacggctttgcggtatatattacagtctcttgatgatggaaaaaattgtcaataa
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