Candidatus Fokinia solitaria: Fsol_00388
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Entry
Fsol_00388 CDS
T05415
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fso
Candidatus Fokinia solitaria
Pathway
fso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fsol_00388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fso03019
]
Fsol_00388
03016 Transfer RNA biogenesis [BR:
fso03016
]
Fsol_00388
Enzymes [BR:
fso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Fsol_00388
Messenger RNA biogenesis [BR:
fso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Fsol_00388
Transfer RNA biogenesis [BR:
fso03016
]
Prokaryotic type
tRNA degradation factors
Fsol_00388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
KH_1
S1
RNase_PH_C
KH_2
Motif
Other DBs
NCBI-ProteinID:
AWD33185
UniProt:
A0A2U8BSA0
LinkDB
All DBs
Position
409690..412038
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AA seq
782 aa
AA seq
DB search
MLSELSKIPFVLCDGDVQLEIGTLAAQSDSSVVVKYGNTTVLCVVVYSQLEKDMGFLPLQ
VNYQEKFYASGKIPGGFIKRETKPSEREILIARRLDRQIRPLFDSSCTKTEIQISCTTLS
YDPKFDPEVAASLGVSAALLLSELPFGGPVCMVKGKMFQNARSEIIIAFTETSVVMIEGK
FPECSTDDFISALENVRTESNVSQFITLIKNFVQEYKIYEEKSRKRDVSVNSDIIEVHSV
LIHSQRVGMQARLEKHIALCNELMKVNDISKYLEQIYKLSDKKARKKNMLILKKCLILEI
CNLYSGQLTEKSLFKNVSNAVKAEFNALWEEGLPIEAISHFVDRYAIEESSSIMRRNLKN
LRTRLDGRKTDEIRTLTAFHSYIPSAHGSALFSRGETQVLAAVTLGGKQDEQLSETIVGS
NRENLMLHYNFPKWSVGEISTSPSLSRREIGHGNLALSAISNVLSNIGNFDYTIRIVADV
LSSNGSSSMATVCASSIALMDAGVPISKHIAGVAVGVVKMDDELIVLSDISGDEDQLGDM
DLKITGTKDGFTAIQMDIKITGVQFSELKVVLDKAKLSLDNILDFMYSVISVPSTSSNSP
QTIVVKIPKEKIRNVIGQGGSMIKHICATSGAKVDIKDTGEAKILGNADSIEKARQMIVD
ITKDVEVNQIYDGLIVKVVDFGCFVKLPTGIEGLLHVSEIPKDEAGLFVEGYKLKVKVMR
VENNRISLTALIDRKKNHSKDEELETDNSRQKAKLRYRKENASQEAADNENGDSSGKKWR
FT
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgttatcggaactttcaaagattcctttcgtgttgtgtgatggagatgtgcaacttgaa
atcggaacattagccgcgcagtcggattcttctgtagtagtgaagtatggaaatacgact
gtactttgcgtagtggtctattctcagctagaaaaagacatgggattcttaccattacaa
gtaaattatcaagaaaaattttacgcttcagggaaaatacctggtggttttataaagcgt
gaaactaaaccgagtgaaagagagattttaattgcccgtagattagatagacaaatacgt
ccgttatttgattcaagttgcacgaaaactgaaattcagatttcatgcactacgctatct
tacgatccgaaatttgatcctgaagtcgctgcatctcttggagtatctgccgctttatta
ctttctgagcttccatttggcggtccagtttgtatggtaaaaggtaaaatgtttcagaat
gcaagatcggaaatcattatagcgttcactgaaacttcagttgtaatgattgaaggaaaa
tttccagaatgcagtacagacgattttatttctgctttagaaaatgtccgtactgaatca
aatgtaagtcagttcattaccttaatcaaaaattttgtacaagaatacaagatatatgag
gaaaaaagccgaaaacgagatgttagcgtaaactctgacataattgaggtgcattccgtg
cttatacattctcaacgagttggtatgcaggcaagactggagaagcatattgcgctttgc
aatgagttgatgaaggtgaatgatatttcaaaatatctagagcaaatatataaattatcg
gataaaaaagcgcgcaagaagaatatgctaattttgaagaaatgccttattcttgaaata
tgcaacttatattctggtcagttgactgaaaagtctctttttaaaaatgtcagtaatgct
gttaaggctgaattcaatgcactttgggaggaaggacttcctatagaggcaatttctcat
ttcgttgatagatatgctattgaagaaagttctagtatcatgagaagaaatttgaaaaat
ctcagaacgagattagacggtagaaaaactgatgaaataagaacgcttactgcatttcac
tcgtatattccaagtgcacatggttccgctttattttcaagaggagaaactcaagtactt
gctgcagtaacattaggaggtaagcaagatgagcagctttcagaaacgatagtaggaagt
aatagagagaatcttatgttgcactataattttcctaaatggtcagttggtgagatatct
acaagtccttctctaagtagaagagaaataggacacggaaatttggcattatcggcaatt
tctaacgttttatcaaatattggaaattttgattatacaataagaatagttgctgatgta
ctatcttccaatggttcatcttcaatggctactgtgtgtgcatcttccattgctttaatg
gatgcaggagtgccaatctctaagcatattgctggtgttgcagttggcgtcgtgaaaatg
gatgatgaattgattgtgctatctgatataagtggcgatgaggatcaattaggcgatatg
gatttaaaaattactggcactaaagatggctttacagcaattcagatggatataaaaatt
accggagtacaatttagtgagttaaaagtagtacttgataaagctaaactgtctttagat
aacatactagactttatgtattcagtaataagcgtgccatcaacttcttctaatagccct
cagacgattgtagtgaaaattccaaaagaaaagatcagaaatgttatagggcaaggtggt
tctatgataaaacacatatgtgctacttcaggtgccaaagttgatataaaagatacaggt
gaagcaaagatccttggaaatgcagattcaatagaaaaagcacgacaaatgatcgtagat
attactaaagatgtagaagttaatcagatatatgatggcttgatagtaaaagttgtagat
ttcggatgttttgtaaaattacctactggaatagaaggacttttgcatgtgagtgaaatc
cctaaggacgaagctggtcttttcgtggaaggctataagttaaaagttaaagttatgaga
gtcgaaaataatagaatctctttaactgcgcttatagatcgcaagaaaaatcattctaaa
gatgaagaacttgaaacggataacagtagacaaaaagcaaaacttagatatcgtaaagaa
aacgcatctcaagaagctgcagataatgagaatggagactctagcggtaagaaatggaga
tttacgtaa
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