Candidatus Fokinia solitaria: Fsol_00486
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Entry
Fsol_00486 CDS
T05415
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fso
Candidatus Fokinia solitaria
Pathway
fso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Fsol_00486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fso03021
]
Fsol_00486
03400 DNA repair and recombination proteins [BR:
fso03400
]
Fsol_00486
Enzymes [BR:
fso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Fsol_00486
Transcription machinery [BR:
fso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Fsol_00486
DNA repair and recombination proteins [BR:
fso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Fsol_00486
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF5612
Motif
Other DBs
NCBI-ProteinID:
AWD33280
UniProt:
A0A2U8BSM6
LinkDB
All DBs
Position
complement(511633..515970)
Genome browser
AA seq
1445 aa
AA seq
DB search
MKDTFLLAEFARLRKFYGRTCFSDVFGENDLISTQIDSYRDFLQLNLASEQRENIGLEKL
LRAIFSIESNEGNATLEYMGYRINPSKYSPQECKRRGNTSYSGALIVKLRLVTWEKKETG
REIKSITEQEVYVGDIPLITESGSFVINGVEKVVILQLHRSPGVLYTHDEGKSNPSGRYL
YSVVIVPRSGFWLTIEFKASGIIMCKSEKGRKFHLTTLFRALNFSTTQIFEIFYDKECCE
YHAAGMWRKSFNHLEYRNRVLNFAVFDLVSGEDFLKAGDRISPKVIENCEQRKGRLYCIF
SSQSLEGRYFMYDVLDDDGDVLVEAGSRVTVEILDEIEKLKGGRNFTLIAVPNPGGGYYI
RDTVVSDPAKDTEEAIVQAYRILKPGEMMPESGANLLHDMFFSEKYGYDLSDVGRMKMNL
TNKTEIPINVHHLTVEDIIAVVKKLCYFMDNGGTPDDQDNLGNRRVRRVADLFEAQCSSN
LARMRKSILDKMSSIDNIEAFNPYELVNYKFLSLMLFEFFNLSVLCNYMAQTNILSSISE
KRRVSCLGPGGLTHDNAPGSARDAHRTYYSRICSIETPEGKNIGLINNLALYARVGRHGF
LEAPYRKVVNGVATDEIEYLSALEDIDTLIVQATEPLNDSNEFVNSTVECRFNGARVYVE
KGIPKYMEIASKQHVSVSASLIPFIENCDAVRALTASNMLRQAVPLMRPQAPLIGTGMEK
AVAQSSDMMIKAKESGVVVYVDSVKIIIRRVREGHQTDFDIYNLNKYLRSNQSTCYNQKP
TVKLGDFVVKGSVLVDCCTEYGHLALGMNVKVAYMSWYGWNYEDAIIVSERIVRDDYFTS
FHIEKIECIVRDTRLGPERVTRDLPNVPESLISHLDEYGVVMPGCVIDTDNMILVGKVTP
QPESPVTPEEKLLRAIFGAKSSDVRDSSLRTSFGVRGVVIGVEIFVKKGADSDDELSIMR
CKAINDATREYQEYVRLLEEFVYDELKSTILGQEINKSSGKVVTQDTLNALDKEKWFDID
VADDVVTAKLSNLKDVLSIKKEKLKSDFDTRIAQINEDDTLHSEDLKVIKIYVMIKRRLR
VGDKMAGRHGNKGVVSIIVPEEDMPIMEDGSKIDIILSPLGIPSRMNIGQIWEVTLGGGL
AALGAKIKSLREKAIASHLNFEDVEKLRDTVIDFYLGNLEKEEQQGEKEKHLSTSWGLIS
DVESVNSSSCEAVADAIKQNERCYSPSSIVKVLRSLSADSLVKLTKDMCNGIPIATPIFD
GVKEHDVDTLLKDCGVSTSGQVRLRDGKTGEYFEMEITVGVLYMLKLHHLSEEKYHVRAT
GPHACITQQPLGGKAKGGGQRLGEMEVWALEGYGAAYNLYEMLTIKSDSVDGRNAAFRDI
CKLMEHIRAMSYCTIMPESSYILLSEMRSLGLHVKLSYDEGFQSRGTYTKIKDVEIRKDD
VEVKS
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatacatttttacttgctgaattcgcaagattacgtaaattttacggtcgtaca
tgctttagtgatgtttttggtgagaacgatttgatatctactcaaatagattcttatcgt
gactttttgcagttgaatctcgcatcagagcaaagagaaaatataggacttgagaaattg
ctacgtgctatcttttctatagagagtaatgaaggtaatgctactctagaatatatggga
tataggattaatccttcaaaatattctcctcaagagtgtaagagacgcggtaatacttcg
tattccggcgctttaatcgtaaaattgcgattagttacttgggagaaaaaagaaactgga
agagaaataaaaagtattaccgagcaagaagtatatgtaggagacatacctctcattact
gaaagtggttcatttgtaataaatggagtagaaaaagtagtaatattgcaattacatcga
tctccaggcgtattatatactcatgatgaaggaaaaagtaatccaagcggaagatacctg
tattctgttgtaatagtgccacgctctggtttttggcttacaatagagttcaaagcgagt
ggtattataatgtgtaagagtgaaaaaggcagaaaatttcatcttactaccttattcaga
gctttgaattttagcacaacacagatatttgagatcttttatgataaagagtgttgtgaa
tatcacgctgcaggtatgtggcgtaaaagctttaatcatctagaatacagaaatagagtg
ctaaatttcgctgtattcgatctcgtaagtggagaagattttttaaaagcgggcgataga
atctcgcctaaagtgatagaaaattgcgagcaaagaaaaggtaggttatactgtattttc
tcttctcaaagtctcgaaggaaggtatttcatgtacgatgtacttgatgatgatggtgat
gtacttgtagaagcaggtagtcgagtaacagtagagattttagatgagatagagaagttg
aaaggaggaagaaatttcactttaatcgcagtacctaatcctggtggaggatattacata
agagacacagtagtttctgatccagcaaaagatacagaagaagctatagtgcaagcttat
cgtattttaaaacctggagaaatgatgccagaatccggtgctaatctgttgcatgacatg
ttcttttctgagaagtacggatatgatttatcggatgttggtagaatgaaaatgaatctc
actaataaaactgagattccgataaatgttcatcatcttactgttgaagatatcatcgct
gtggtaaagaaattgtgttacttcatggataatggcggtactccagatgatcaagataac
ttaggtaatagacgtgtaagaagagttgctgatctttttgaagcgcagtgttcatcaaat
ttagctaggatgagaaagagtatcttagataaaatgtcatctattgataatattgaagct
ttcaatccctatgaattagtgaattataaatttctttcactaatgctatttgagttcttt
aatctttccgtgctatgcaattacatggcgcaaactaatatattatcgagtatcagtgaa
aaaagacgcgtttcatgcttaggacctggagggcttactcatgataatgctcctggttct
gcaagggatgcgcatagaacgtattattcgcgtatatgttctatagaaactcctgaaggt
aagaacatcggtctcatcaataatttagctttatatgcaagagtaggtcgtcatggcttt
ttagaagcgccttatcgtaaagtagtgaatggagttgcgacagatgagatagagtattta
tccgcattggaagatatcgatactcttatagtgcaagcaacagagccgcttaatgatagt
aatgaatttgtgaattctactgtagaatgcagatttaacggtgctagggtatatgtagaa
aagggtattccaaaatatatggaaattgcttcaaagcaacacgtttcagtttcagcttct
ctcataccttttatcgaaaattgcgatgctgtgagagcgttgactgcttctaatatgcta
cggcaagcagtacctttgatgcgtcctcaagcgcctctcataggtactggtatggaaaag
gcagttgcacaaagttctgatatgatgataaaagctaaagaatctggcgtggtagtttat
gttgattctgttaagattatcataagaagagtaagagaagggcatcagactgattttgat
atttataacttaaataagtatctgcgtagtaatcaatctacatgctataatcagaaacct
acagtaaagttaggtgattttgtagtaaaaggtagtgtcttagttgattgctgtactgaa
tacggacaccttgccctcggcatgaatgtgaaggtcgcatatatgagttggtatggttgg
aattacgaggatgctatcatagtatctgaaagaatagtaagagatgattactttacttct
ttccatatagagaaaatagaatgcattgtaagagatacaagattaggccctgaacgcgta
acgcgagatcttcctaatgtaccggaaagtctcattagtcatctagatgagtatggagtt
gtaatgcctggttgtgttattgatactgataatatgatactagttggaaaagtcactcca
cagcctgagtcaccagtcactccagaagaaaaattgttgagagcgatttttggtgcgaaa
tcatcagatgttagagattcttctttgagaacatctttcggcgtaagaggtgtagtaata
ggcgtagagatctttgtgaaaaagggcgcagattcagatgatgaattatccattatgaga
tgtaaagcgatcaatgatgctacaagagaatatcaagagtatgtgagattacttgaggaa
tttgtttacgatgaactgaaaagcacaattttaggacaagaaattaataaaagttccggc
aaagtggtaacgcaggatactttgaatgctttagataaagaaaaatggttcgatatagat
gtagcagatgacgttgtaactgctaaattaagtaatttaaaagatgtactttctataaaa
aaagagaagttgaaatctgattttgatacacgcatagcgcaaatcaatgaagatgatact
ttacattctgaagatctgaaagtgattaaaatttacgtgatgataaaacgtagattgcgc
gtaggtgataagatggctggaagacatggaaataaaggcgttgtatcaattatagtgcct
gaagaagatatgcctattatggaagatggctcaaaaatcgatattattttaagtccgctt
ggtatcccttctaggatgaatatagggcaaatatgggaggtaacattaggaggaggatta
gctgctctcggtgcaaagataaaatctttaagagaaaaagcaattgcctctcatttaaat
tttgaagatgtagaaaaattgagggatactgtgatagatttctatctaggaaatcttgaa
aaagaagagcaacaaggagaaaaggaaaagcacttaagtacgagctgggggcttatttct
gatgtagagagtgtaaactcaagctcatgtgaagctgttgctgatgctataaagcagaat
gagagatgttattcaccttcttctatagtaaaggtattaagaagtttatctgctgatagt
ttagtgaaattgacaaaggatatgtgtaatggcattcctattgccacccctatatttgac
ggtgtaaaagagcatgacgttgatactcttctcaaagattgtggagttagtacctctgga
caagtaagattaagagatggaaagactggagaatattttgagatggaaataactgttggt
gtactgtatatgctgaaattacaccatttaagtgaagagaagtatcatgtcagagctaca
ggacctcatgcgtgtataacacagcaacctctaggaggaaaagctaaaggaggaggacag
cgtttaggagaaatggaggtgtgggcattagaaggatatggtgctgcatataatttatat
gagatgctaacgatcaaatcggattctgtggatggacgtaatgctgcatttagagatata
tgtaagcttatggagcatatacgtgcaatgagttattgtactattatgcctgaatctagc
tacatccttttaagcgagatgagatctcttggattacatgtaaagctatcttatgatgaa
ggatttcaatctcgtggcacatatacaaaaataaaggacgtagaaataagaaaggatgat
gttgaagtaaaatcataa
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