Francisella salimarina: KQR59_07625
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Entry
KQR59_07625 CDS
T07516
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fsr
Francisella salimarina
Pathway
fsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQR59_07625 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsr03019
]
KQR59_07625 (rnr)
03016 Transfer RNA biogenesis [BR:
fsr03016
]
KQR59_07625 (rnr)
Enzymes [BR:
fsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KQR59_07625 (rnr)
Messenger RNA biogenesis [BR:
fsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KQR59_07625 (rnr)
Transfer RNA biogenesis [BR:
fsr03016
]
Prokaryotic type
tRNA degradation factors
KQR59_07625 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
RNase_II_C_S1
CSD2
Ras
Motif
Other DBs
NCBI-ProteinID:
QWU98965
UniProt:
A0AAJ4NN28
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All DBs
Position
complement(1549681..1551972)
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AA seq
763 aa
AA seq
DB search
MSKYNIHNDPNRDVEAQKYENPIPSREVILKYIKDTNIPVSIENIANALEIFKKNLFDGL
VNRLGAMVRDGQLEKDKSYYNLPEMTPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQT
KMVMAGDEVTAKVLGLNKRGRIDAEIKTIVSRSQKTITGYYYKSFDCDFIKPISKSMTSD
IVLLPPRQKIEHNSLIEAEIVVYPSINSAAVAKFKQEVEAVSPVKEAMMMATQKYDLIEQ
WSKKALRYLDNISDDVIVGNRVDLRNENFVTIDGEDAKDFDDAVYAHKTKSGGWKLYVAI
ADVSNYVEKDSGLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNI
SKTGKLSRYKFYSAVINSKARLTYTEVAKLLEKKQNSIVDKTPELIPNLFDLYELYKVLH
GARQERGAIDFDTVETQIILNEHSHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRPDYDDIQ
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGGADY
KSSELANICENASNQERNADGASKQVESWLKCYFMQDYIGNVLEAQVKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLERIHIDFEL
YDPRKPNLDKNNDKPYPKKSKKPNKAKKKRARRRKKAKTKAAQ
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaatataatatacataatgatcctaatagggatgtcgaagcacaaaagtacgag
aatccaattccaagtagagaagtgattctaaaatatataaaagatactaatattcctgtt
agtatagaaaacatcgcaaatgctttagaaatttttaaaaaaaatctttttgatggtctt
gtaaatcgtttaggtgcaatggttagagatggacagttagaaaaagacaaatcatactat
aatctaccagaaatgacgccaatatatataacatctaaagtaacagctgatagagactcc
cgtttagagttatttagccatactttaaatactaaggttggaattgtatctcatcagaca
aaaatggtaatggctggtgatgaagtaacagctaaagttcttggacttaataaacgtggt
cgaatagatgcagaaattaaaacaatagtttcaagatcacaaaaaaccatcactggatac
tactataagagttttgattgtgattttattaagccgataagtaagagtatgacaagtgat
atagtgctattaccaccgaggcagaaaatagaacacaattctctaattgaggccgagatt
gttgtttatcctagtataaatagtgcagctgtagctaagtttaagcaagaggtcgaagca
gtatctccagttaaagaagcaatgatgatggcaacacagaagtatgacttaatagaacag
tggagcaaaaaggctttgcgctatttagataatatttctgatgatgtgattgttggtaat
agagttgatttgcgtaatgaaaattttgtaactatcgatggtgaagatgccaaagatttt
gatgatgctgtttatgcacacaagactaaaagtggtggctggaaactatatgttgcgatt
gcagatgtgtcaaactatgttgagaaagattcaggcctagatttggatgctaagcgtcgc
tcaacttctgtttattttcctggatatgttattccgatgttaccagagaagttatcaaat
ggattatgttcgttaaaacctaatgaggatagatattctctagtttgtgagatgaacata
tctaaaactggtaagctttctagatataagttctattctgcagtaataaactcaaaggcg
cgcttaacttatacagaggttgcaaaacttttagagaagaaacaaaactctatagttgat
aaaactccagagttgataccaaatctatttgatttatatgagttgtataaagtgctacat
ggagctaggcaagagcgaggcgctatagactttgacaccgttgaaacacaaataatatta
aatgagcatagtcatattgagtcaatagtaccaagacatcgtaatgatgcgcatagatta
atagaagagtgtatgcttgtagcaaacgttgcagcagctaaattcaccattaagcataaa
aaaacatcgccatttagagttcatagtgagcctaaagaagataggatggagactcttaag
aagtatcttgctaagcatggtatacatcttgcatatggtaaaaatggcaaagttacacca
aaggctttggcagaaatgttagatagtataaaggatcgtcctgattatgatgatattcag
atgatgactttgcgtagcatgaatcaagcggtgtatagtataaataatgatggacacttt
ggattggcatatagtgaatatactcattttacatcgccaattcgaagatatcctgactta
gtagtacacagaataattaaatcaattattggcgagtatgagcatggtggtgctgattat
aagtcttctgaattagcaaatatttgtgagaatgcttcaaatcaagaacgaaatgcagat
ggtgcatcaaagcaagttgagagctggttgaaatgctatttcatgcaagactatattggt
aatgttttggaggctcaagttaagcatgttaatggcttaggtctatttgctgagctaaaa
gatatgtatatagaaggcttgatacacgtttctgctattccaggggattattatatttat
gatgaagctaaagatatattgattggtaagagaactcataaagtttataagataggtcaa
gatattactgtaagagttgtcagagcagatttagaaagaattcacatagattttgaatta
tatgatccacgtaagccaaatttagataaaaataatgataagccgtatcccaagaagtca
aaaaaaccgaataaggctaagaaaaaaagagctagacgtagaaaaaaagcaaaaacaaaa
gcggctcaataa
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