Fibrobacter succinogenes: Fisuc_0875
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Entry
Fisuc_0875 CDS
T01099
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsu
Fibrobacter succinogenes
Pathway
fsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fisuc_0875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsu03019
]
Fisuc_0875
03400 DNA repair and recombination proteins [BR:
fsu03400
]
Fisuc_0875
Enzymes [BR:
fsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fisuc_0875
Messenger RNA biogenesis [BR:
fsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fisuc_0875
DNA repair and recombination proteins [BR:
fsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fisuc_0875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
Viral_helicase1
AAA_22
ResIII
AAA_30
AAA_16
AAA_12
AAA_11
Hema_stalk
Motif
Other DBs
NCBI-ProteinID:
ACX74483
LinkDB
All DBs
Position
1092191..1097158
Genome browser
AA seq
1655 aa
AA seq
DB search
MADFSKFLFFDLEYNPETQKVREYGYILGEEEVRERNTAKLEQAASKAKYIVGHNVLRHD
APILRQYFSIDFPNIHALDTLMLSSLLFPRKPYHKLRKEYLHNEDEPSNPLEDTKLCKKL
LEDCIKKWDNYPWQLQYLLFQFLKNEPGFAPFFELVDTPNPIKLRLKLSEIQHWFTENYE
KTICLRQNFQNEWAAYRAEWCFLLTLFHEEGPSDYVPHWVRYQYPHLENILHRRRLVPCG
NPQCPYCSEQLNSTKQLKKWFGFDNFRSFNGEQVPLQQQVVESAMRGESLLAVFPTGGGK
SMTFQLPALIAGTQIGALTVVISPIVALMKDQVDVLEKRRQIGDAAYINSMLSPAERKDV
IEKVNNGEKNILYISPESLRSNTTFNLLKHRRVERIVVDEAHCFSGWGHDFRVDYLYLAD
FLKDLQKEKNLETPIPVSCFTATAKQSVVDDICNYFKERLNLDLIKFISPAKRTNLTYKV
LESSESPNERRKQLVNVLRDYNGPKIIYASKVKTTESLAEELHNRGFASACYNGKMESEK
KMTIQDQFQNGEVDTMVATTAFGMGVDKDNVELVAHYEISSTLENYVQEAGRAGRDPKLQ
ASCIALFNPKDLDTNFQILQQSKLSAQEISAVWRVLKKAAGNQNRLIMSALEIADQCGWT
EKETDASVNTTKVKLAILVLEEQGFLKRKRNRTQMYGSSITVESAEQAREAIGSDKIEIL
NSVESIAYRIIHHIISKRWTRSPECALDELTVNLGLTREQANDGLRLLRSLHLLNEDDDW
SARLQRKGNDTPRSLLKAAYELQEELLKACEGKGINDRFVLDMTKLNSLLNQRGDAVGAS
TSRRNLFIFRGILRYWAHESVAEIHLVEAGHQVYQIEFLVPPESVKENLRKQWKLFDKVI
DTLIEMQKEQTRQNGNIVWFSLNGLMKRMYKEKGEIAVARIEKQKQLEYALLFLHLVGSI
TLDHGLVVFYTGLVMELNPEAKQRNFTAKDFEMLNTHYKHKAEAIHIVGEYAKMMLIDEK
AAQQLLDDYFVMDIADFRLKYMQGIEQMESVSDELKRKIESVNDEQRKIIKSRKKHILVG
AGPGSGKTHLLVHKVASLLWIEEAKPDSILCLTYTRAACRELKKRLFDLAGPLAAKVNIT
TFHSLAFSILGVQGNKKALENADDVVSKAAELLESGEEAGVGAPTVILVDEFQDLSAGEY
RLLRALYDLGEKDPRVIVVGDDDQSIFAFRGSSSEYFQKFADEFPNTEKFYLTTNYRSVA
GLVRANAKLLELMTERVKEGSQQLALKHSQAELAFYEEGDKATAAFGAAEILAQKFKSNP
TESYCILTRENAEAFLAAAKLEEKQVPYRMLKGRDKDKCPIEKTREILGFYAILQEDPRV
GKFPWSAKEFKRIAEDYKTSHPTESSFELLDALIDDFIETETACGEDSITLGDFNQYLSE
VSYSDFSSKNMGAVSIGTMHSAKGLEWDNVILALGSWVLKDADEKKAQENYRLLYVAATR
AKKSLTIIGDEKMLPHEWISHFAKQGKVNSVKIPNVLHIETGLSDVNLGHLLENEKNRNR
VRYIQSKLETSSLQSDVSVNFSQEFHNYNTNINGRLIAAFSNDFSKKCIAYLQRYGYKPT
TTATLSQVVRWTSDDGQETWVPLFRVEFAKDSINK
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttagcaaattcttattttttgatttggaatacaatcccgaaacacaaaag
gttcgggaatacggctatattctaggcgaagaagaagttcgtgaaagaaatactgcaaaa
ctagaacaagcagcatcaaaagcaaaatacatcgtagggcacaatgtacttcgtcacgac
gccccaatactccggcaatatttttctattgattttccaaacatccatgcgctcgacact
ttaatgttgtcatcgttattgtttcctcgcaagccttaccacaaactacgcaaggaatat
ctgcataatgaagacgaaccttcgaacccgttggaagacaccaagctttgcaagaagctg
ttagaggactgcattaaaaaatgggataattatccgtggcagctccaatatctactattt
caatttctaaaaaacgagcctggttttgcgccatttttcgaacttgtcgatacgccaaat
ccgataaaactacgtttaaagctgtcagaaatacaacattggtttaccgaaaactacgaa
aaaacgatatgccttcgccaaaactttcaaaacgaatgggctgcatatcgtgctgaatgg
tgttttcttttaacactttttcatgaagaagggcctagcgattacgtaccacattgggtg
cgataccaatatccgcatcttgaaaacattttgcatcgcaggcgacttgttccctgtggc
aacccgcaatgtccttattgttccgaacaactaaactccaccaaacagttaaagaaatgg
tttggttttgacaattttcgttcttttaacggagaacaagttcctctgcaacaacaagtc
gtcgaatcggcaatgcgaggagaatctttgttagcggtattcccgactggtggcggaaaa
tccatgacgttccagctacccgcattaattgcaggaacacaaataggagcgcttacagtt
gtaatatctcctattgttgcactaatgaaagaccaagttgacgtactcgaaaaacgaaga
cagattggagacgcggcctacataaactcaatgctatcgccagccgaaagaaaagatgtc
attgagaaagtcaacaatggcgaaaagaatattctttacatttcaccagagtcattgcgt
tccaatacgacattcaatttattgaagcacagacgcgtagaacgaatcgtcgttgacgag
gcacactgttttagcggttggggacatgattttagagtcgactatctttacttagcagat
tttctaaaagatttgcaaaaagaaaagaatcttgaaactccgattcccgtaagttgtttt
acggctacagcaaagcaatctgtggtagacgatatttgcaactatttcaaggaacgtctt
aatcttgatttaatcaagttcattagcccagccaaacgaacaaacctgacatacaaagtt
cttgaatcttcggaatcacctaacgaacgtcgtaaacaattagtaaatgttcttcgtgat
tacaatggtcctaaaatcatttacgcatccaaggtcaagactacagaatctctagccgaa
gaattacacaaccgcggttttgcaagtgcctgctataatggcaaaatggaatccgaaaag
aagatgaccattcaagaccaattccaaaatggtgaagtcgacacaatggtcgcaacaacc
gcatttggaatgggcgttgataaagacaatgttgagttagttgctcattacgaaatttca
agtacgcttgaaaattatgttcaagaagcgggacgtgcaggtcgtgatcccaaattgcaa
gcaagctgtattgcactattcaatccaaaagatctcgacacaaattttcaaattcttcag
caatctaaactttctgcacaagaaatttctgctgtttggcgagtacttaaaaaggcagca
ggtaatcaaaatcgtttgattatgtcggcacttgaaattgccgaccaatgcggatggact
gaaaaagaaacggacgccagcgttaacacaacaaaagtcaagctagccattctcgttttg
gaagaacaaggattcctaaaacgtaaacgcaatagaacccaaatgtacggttcttctatt
acagtagaatccgcagagcaagcccgagaagctataggctccgataaaattgaaattctt
aattcggtagaaagcattgcataccgaatcattcaccacatcatcagcaaacgttggaca
cgatctcctgaatgcgctcttgacgagctcactgtcaatctaggcttaacaagagagcaa
gccaacgacggcttacgtttgctgcgttcattacaccttcttaatgaagacgatgactgg
agcgcaagattacaaagaaaagggaacgacacacctcgttcactcttaaaagcggcatac
gaactacaagaggaactattaaaagcttgtgaaggcaagggaattaacgatcggtttgtg
ttagacatgaccaaactcaattccctgttgaaccaaagaggcgatgcagttggtgcatca
acatcacgtcgcaatcttttcatattccgtggtattttacgctattgggcacatgaaagt
gtcgccgaaattcatcttgtagaagcgggtcaccaagtttatcaaattgagtttcttgtt
ccgcctgaatccgtcaaagaaaatctcagaaagcaatggaaattatttgacaaagtcatt
gacaccttgatagaaatgcaaaaggaacagactcgccaaaatggaaatattgtctggttc
tctttgaatggcttaatgaaaagaatgtacaaggaaaaaggtgaaatagctgtcgctcgc
attgagaagcaaaagcagcttgaatatgcacttcttttcttacatcttgttggttctatc
acgctagatcatggtcttgttgttttctataccggacttgtcatggaattaaatccagag
gcaaagcaacggaatttcacagccaaagattttgaaatgctcaacactcattataagcac
aaggctgaagctattcacattgttggcgaatatgcaaagatgatgcttattgatgaaaaa
gcggcacaacaattgctagacgattacttcgtcatggatatagcggatttccgtctaaaa
tatatgcaaggcatagaacagatggaatccgtatccgatgaattaaaacgaaaaatagaa
agtgtcaatgacgaacagcgcaagattatcaaaagccgtaaaaagcacattctcgtaggt
gcaggtccaggctcgggaaaaacgcacttactcgtccataaagtagcctctcttttatgg
attgaagaagcaaagccagattcaatcttgtgtctaacatatactcgcgcagcatgtcgc
gagctgaagaaacgtttattcgatttagcaggccctttagcagcaaaggtaaatatcacc
accttccattcgctcgccttttcaattttaggagtacaaggaaacaaaaaagcgcttgaa
aatgcagacgatgtcgtatccaaagcagcagagcttttagaatcaggcgaagaagccggt
gtaggagcacccacagttatcttggtcgacgaatttcaggacctatccgcaggagaatat
cgcttattacgagccctatatgatttaggagaaaaagatcctcgcgttatcgtagttggc
gatgacgatcaaagtattttcgcgttccgaggaagttcctccgaatacttccaaaaattt
gccgacgaatttcctaatacagaaaaattctatctaacaactaattaccgttccgttgct
ggtctcgtccgagcaaatgcaaaattactcgaattgatgacagaacgcgtaaaagaaggt
tctcaacaactcgctttaaagcatagccaagccgagcttgcattttacgaagaaggagac
aaggcaactgcagcattcggcgcagctgaaattcttgcacaaaaattcaaatcaaatcca
actgagtcttactgcattttaacccgagaaaatgcagaagcgttcttggctgcagcgaag
cttgaagaaaaacaagttccatatcgaatgttaaaaggccgagataaggacaaatgcccc
attgagaagactcgagaaattttaggtttctacgccattcttcaagaagatccaagagtg
ggaaaatttccgtggagcgcaaaagaatttaaacgcatagccgaggactataaaacaagc
cacccaacagaaagctcctttgaacttttagatgcactaatagatgattttatcgaaaca
gaaactgcttgtggtgaagattctattactctaggcgacttcaatcaatatttaagcgaa
gtatcttacagcgatttttcatcaaaaaacatgggcgcagtttctattggaacaatgcat
agtgcaaaaggacttgaatgggataatgttattctcgcattaggctcttgggttctgaaa
gatgccgatgaaaagaaggctcaggaaaattatcgcttgctatatgtcgcagccacccgt
gcaaagaaaagcctaactattatcggcgatgagaaaatgctaccacatgaatggattagc
cactttgcaaaacaaggtaaagtcaatagtgtaaaaattccgaatgttttgcacattgaa
acaggactcagtgatgtcaatcttgggcatcttcttgaaaatgaaaaaaacagaaatcga
gttcgatatattcaaagcaaacttgaaacatcatccctacaaagcgatgtcagcgtaaat
ttcagtcaagaatttcacaactacaatacaaatattaacggaaggctgattgcggcattc
tctaacgacttttcaaaaaaatgtatcgcatacctgcaaaggtacggctataaacctact
actacagcaactctttcacaagttgttcgctggacatctgatgatggtcaagaaacatgg
gtgccactatttagggtggaatttgctaaggattctatcaacaaatag
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