Fibrobacter succinogenes: Fisuc_1033
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Entry
Fisuc_1033 CDS
T01099
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fsu
Fibrobacter succinogenes
Pathway
fsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fisuc_1033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsu03019
]
Fisuc_1033
Enzymes [BR:
fsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fisuc_1033
Messenger RNA biogenesis [BR:
fsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fisuc_1033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
UvrD_C
HEM4
CMS1
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
ACX74638
LinkDB
All DBs
Position
complement(1275449..1276909)
Genome browser
AA seq
486 aa
AA seq
DB search
MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL
QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQK
LIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDR
QNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKELL
AEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVL
VATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLRG
IEKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRGNRKG
NHGKQNSNNAPHNSEQISRNPAQNVTVQNAPADNTPNPQNGGRRHRRNRPGSRARRRMRE
SQSQQQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaacttcctttggcaaatccattgcagcgggctgtccgcgctgttgga
tacgaaaccccgaccccgattcaagaacgttccatcccgagtcttcttgaaggcaaggat
ctcttgggaattgctcagacgggaaccggcaagacggctgcttttgcgctcccgattttg
cagcgacttttggattccgggaagttccgttctcccaaaacttgccgtgctttgattttg
ttgccgacgcgtgagcttgccatccaggtggaagactgcttcagggaatatgcacagttc
acggcaatttcgacggcgtgcatttttggtggcgtgaatgacaatccgcaaaagcaaaag
cttattcgcggtgtcgatgtgcttgtcgctaccccaggacgtttgttggatttgattggg
cagaaggcaatatcgctcaagaaacttgaattctttgtgctcgacgaagcggaccgcatg
ctggacatgggctttatccatgatatccgcaaggttgtagcgatgctcccgcaagaccga
cagaatttgttctttagcgctacgatgccggaagaaatttcgaaacttgccgcgacgatt
ttgcgcccgaatccggtgcgtgttgaagttgctccgcagagcactccgattgaacgcatc
cgtcaagagctttatcgcattgacaagcgccgcaagggggctctcctcaaggagcttttg
gcagaacaccctgaaatgaaaaaggtgcttgtcttctgtcgtacaaagcatggtgcagat
aaaattgtgcgcgtgcttgaaaaggctggcatcaagtgtgcagctattcacgggaacaag
agccagaaccgtcgtcaagaagctctcggaaatttcaagtgtgaacaaattcgagtgctt
gtggcaacggacattgcagcacgtggcattgatgtggatgatgtgagccatgtgttcaat
tacgatttgccgaatgaacatgaaacgtttgtgcatcgcattggccgtacggcccgtgca
gggaaggaaggcgttgccatttcgttctgctctccggacgaagaatccgatttgcgcggg
attgaaaagcttactcgtgtgaaaatcccggaaggcgatcagagcatttacgagaatctc
ccacctccgcaaaaagaaactgccgaaagcatgatgcgcaattctcgcggtcgcatgtcg
cgcgaagaagctcaggcccgcgctgcagaaacccgcaataatcgcggcaatcgcaaagga
aatcacggaaagcagaattctaacaatgcaccgcacaattccgagcagatttctcgcaat
cctgcccagaatgtgaccgtacaaaatgctccggctgataatactccgaatccgcagaac
ggcggtcgccgtcatcgccgcaaccgcccgggttcccgtgctcgccgccgcatgcgcgaa
tcgcaatcccaacagcagtaa
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