Fibrobacter succinogenes: Fisuc_1936
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Entry
Fisuc_1936 CDS
T01099
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fsu
Fibrobacter succinogenes
Pathway
fsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fisuc_1936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsu03019
]
Fisuc_1936
03009 Ribosome biogenesis [BR:
fsu03009
]
Fisuc_1936
Enzymes [BR:
fsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fisuc_1936
Messenger RNA biogenesis [BR:
fsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fisuc_1936
Ribosome biogenesis [BR:
fsu03009
]
Prokaryotic type
rRNA helicases
Fisuc_1936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
HEM4
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACX75526
LinkDB
All DBs
Position
complement(2387610..2390018)
Genome browser
AA seq
802 aa
AA seq
DB search
MAEDLSCGPEIDIPENNDNSKLQLEADAFLNAIAGGADEDQADEAAFFAANPDGIVVDDN
GEVLESGANSKIKKGEKVEFINDDETTSEQEKPAEAEDATAATDSANLNEDPADEEDVGD
ESLVTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSL
PLLSRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRAL
KRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQ
RALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEG
EEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVAT
DVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEK
ATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDGVA
LEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNEDF
GLNSEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGR
IKLFDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASREER
RSFHRDRKGGFHDDERRGGFRKNREGGDRFGDKPFENRKARRERQFADRKPSKFEDKPFR
KDRDERSFGDKPFRKTRRFGRV
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatctttcttgcggcccggaaattgacattccggaaaataacgacaactct
aaattgcagcttgaagcagatgcgttcttgaacgccatcgcaggcggagcagacgaagac
caggctgatgaagccgcattctttgcagcaaatccggacggcatcgtcgttgacgacaac
ggcgaagttttggaatccggtgcaaactccaaaattaagaaaggcgaaaaagtcgaattt
atcaacgatgacgaaacgactagcgagcaagaaaagcccgctgaagcagaagacgcaaca
gccgcgactgattcggcaaacttaaatgaagaccccgcagacgaagaagatgtcggcgat
gaatctttggtgacgttcgacgatcttggcctctctccggaagttctcgaagcggtcaaa
ctcgccggttacgaaacgccctcacccatccaggctaaggccatcccggcgcttttgcag
ggcgcaaaccttctcggaacagcacagacaggtaccggcaagacagcagcattctcgctc
ccgctcctttcgcgcatcaacttcaacggacgcgaaacgtctatgctcgtgctcacgccg
acacgcgaacttgcgatccaggtttcagacgccatccagcaatacgccgtcaagatgcaa
aacgtgacggttgttccggtctatggcggtcaggatatcgctatccagttgcgcgccctc
aagcgcaaggcaagcatcgtcgttgccacaccgggccgtttgattgaccacatcaagcgc
ggttctatttcgctcggagcagtcaaagccatcgtcctcgacgaagccgatgaaatgctc
gacatgggcttcatggaagacgtggaaaccatcctcaaggaaatccccgccgacgcccag
cgcgccctctttagcgccaccatgccggacagcgtcaagaagattatcgaccagcacctg
ggtgaatacgaagaagcccgcatcgaaggcaagacgaccacggtcgaaaacatttgccag
cgctacttgctcgtgaaaaacgaacacaagatcgaagcgctcgcccgcgtgctcgaaggc
gaagaatttgacggcgtactcattttcgtgcgcaccaagcagaacaccaccgaagtggcc
gaaaagctcgaaagccgaggcttcaacgtggccccgcttaacggtgacctcgcccagtcc
atgcgcgaacgcaccatcaaccgtctcaagatgggcaagctcgatatcgtcgtcgcaaca
gacgtcgccgcccgcggtattgacgtggaccgcatttcgctcgttgtgaactacgacatt
ccgtacgacaccgaatcctacgtgcaccgcattggccgtacaggccgtgcaggccgcagc
ggtaacgccatcttgttcatcacgccgcgtgaaaagcgcatgctcaagaccatcgaaaag
gcaactcgccagccgattgacgtgatggaaatgccgacctccgaacaaattagcaagaag
cgtgttgacgcattcaaggctaaagtcaagagcgttgtaagctacggtgaactcgaccag
ttcaaggaactcgtccgcgcactcgctgcagaaggttgcaacatgaaggatggcgtagcc
ctcgaagatggctccgtcaacgaaatgaccgccgaagacatcgctgccgccgtcatcaag
atgtaccagaaaaaacagccgcttttcccgaacctcccgccgctcgaagctccgaaggaa
cgtcgcgaaaaagtccgcacaggcagagacttcctcggcgaaagccgcaacgaagatttc
ggcctcaatagcgaagagcagaagcgcatgcgtaaggaacgcaaagaaggcctaaacggc
gtcgaagaaggcttcttgcgctattaccttggcgttggccgcatcgaccatgtgacccct
cgcgacatcgtgggtgcaatcgccggcgaagcaaacatcaacagcagcaacatcggccgc
atcaagctctttgacaagttcagtaccgtagaactcccgaacacactcccgcaagacgtt
ctcgacatcttgtccgaaatgaccattcgtggcaacgatgcacgcttccgcgtgatgacc
gatgaaccacccgagggtcccgcaccgggaacaagaccgcacgctagccgcgaagaacgc
cgcagtttccatcgcgaccgcaagggaggcttccacgacgatgaacgccgtggcggattc
cgcaagaatcgcgaaggcggagaccgctttggcgacaagccttttgagaaccgcaaggca
cgccgcgagcgccaattcgccgaccgcaaacccagcaagttcgaagacaagcccttccgc
aaagaccgcgacgaacgcagctttggtgacaagccattccgcaagacacgccgtttcgga
agagtctaa
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