Candidatus Protofrankia datiscae: FsymDg_1819
Help
Entry
FsymDg_1819 CDS
T01530
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
fsy
Candidatus Protofrankia datiscae
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fsy03016
]
FsymDg_1819
Enzymes [BR:
fsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FsymDg_1819
Transfer RNA biogenesis [BR:
fsy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FsymDg_1819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEH09266
UniProt:
F8B6H0
LinkDB
All DBs
Position
complement(2148522..2149946)
Genome browser
AA seq
474 aa
AA seq
DB search
MTSTVPDSSHQLGQGPDNSAGAARPLLEPAEGIPAVIVDRTALLAAAARLAAGTGPVAFD
AERASGYRYSQRAYLVQIRRRGSGTHLLDPVALADLTCVQDAVGDAEWVLHAANQDLPCL
AEVGLRPSRLFDTELAGRLLGYERVGLGIMVEKVLGFTLEKGHSAADWSTRPLPEPWLRY
AALDVELLVELRDALETELETQGKLAFAREEFAAIAAAPPREPRPGLWRRTSGIHRVRNR
RQLAAVRSMWTTRDRIARERDIAPGRVLPDSAIIEAVLAAPADIEALTRLPVFSGPRLRR
TARTWFTALREATGLPDDALPAPASANADTLPPPNRWADRDPAAAARLTRVRARLTAIAA
ERTMPVENLLEPALARRLAWSPPRPAADEQPVDDQPADDRRVTTELVAGMLRAGGARPWQ
VTLTAGPIADALAEPPAEPAAAEPVAAAEPVTEAAARPAAEPAAEPTNGPGGSA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtcgacggttccggactcatcccaccaactcggccaagggccggacaacagcgcg
ggagcggcccgcccgttgctggaacccgccgagggcatacccgccgtgatcgtcgaccgg
acggcactgctcgcggcggcggcacggctggccgccggcacgggcccggtcgccttcgac
gccgaacgggcctcaggctaccgctacagccagcgggcctacctcgtccagatacgccgc
cgtggctcgggcacccaccttctggacccggtcgcgctcgccgacctcacctgtgtgcag
gacgccgtcggcgacgccgaatgggttctgcacgcggccaaccaggacctgccctgcctg
gccgaggtcggcctgcgtccgagccggctcttcgacaccgagctggccggccggctgctg
ggctacgagcgggtcggactcgggatcatggtcgagaaggtgctgggcttcaccctggag
aaggggcactccgccgccgactggtccacccggcccttacccgaaccgtggctgcgctac
gccgcgctcgacgtcgaactgctcgtcgaactgcgcgacgccctggaaaccgagttggag
acgcagggcaagctggccttcgcccgggaggagttcgccgcgatcgcggccgctccccca
cgggaaccacggccgggcctgtggcggcgcaccagcgggatccaccgggtccgcaaccga
cgccagctcgccgcggtccgctcgatgtggacaacccgggaccggatcgcccgcgaacgc
gacatcgcgcccggccgggtactcccggacagcgcgatcatcgaagcggtgctggccgct
cccgcggacatcgaggccctgacccggttgccggtcttctccggcccgcgcctgcgccgc
accgcgcggacctggttcaccgccctgcgggaggctaccgggctgcccgatgacgctctg
cccgcgcccgcctcggcgaacgccgacaccctaccgccaccgaaccggtgggccgaccgc
gacccggccgcagccgcccggctgacccgggtacgcgcccgtctcaccgcgatcgccgcc
gagcggaccatgccggtggagaacctgctggaaccggcgctcgcccgccggctcgcctgg
tcaccaccgcgtccggcggccgacgagcagccggtcgacgaccagccggccgacgaccgg
cgtgtgaccaccgaactggtggccgggatgctgcgggccggcggcgcccggccctggcag
gtgacgctcaccgccgggccgatcgcggacgccctggccgagccgccggcagaaccggca
gcggcagaaccggtggcagcagccgagccggtgacggaagcagcggccaggccagcggcg
gagccggcagccgaaccgacgaacggcccgggcggaagcgcgtag
DBGET
integrated database retrieval system
