KEGG   Candidatus Protofrankia datiscae: FsymDg_3612
Entry
FsymDg_3612       CDS       T01530                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
fsy  Candidatus Protofrankia datiscae
Brite
KEGG Orthology (KO) [BR:fsy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fsy03400]
    FsymDg_3612
Enzymes [BR:fsy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FsymDg_3612
    5.6.2.6  RNA 3'-5' helicase
     FsymDg_3612
DNA repair and recombination proteins [BR:fsy03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    FsymDg_3612
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr DEAD WH3_Lhr WH2_Lhr Helicase_C ResIII
Other DBs
NCBI-ProteinID: AEH10891
UniProt: F8B391
LinkDB
Position
4256030..4260487
AA seq 1485 aa
MPAPSPLTLFSAPTRAWFAGVFTAPTPAQAGAWEAISHGDDVLVVAPTGSGKTLAAFLWS
LDRIARAGPPADASRRCRVLYVSPLKALAVDVERNLRAPLAGIRATAARLGRPEPDVRVG
IRSGDTPAAERRTFGRLPPDVLITTPESLFLILTSQAREALRGVETVIVDEVHAVAGTKR
GAHLALSLERLDALLDTPAQRVGLSATARPTEEVARFLGGARAVTVVRPPTGKTLRIDVV
VPVPDMTQLAGPTPAASIWPAVEERILDLVLAHRSTIVFANSRRLAERLCARLNEAYAQR
MRDPSLEVARAHHGSVSRQQRALIEDDLKAGRLPAVVATSSLELGIDMGAVDLVVQVESP
PSVAAGMQRVGRAGHRVGAASRGVIMPKHRGDLLSCAVVAERMRDGGIEQLRYPRNPLDV
LAQQIVAMVAMDPWPVDDIAALVRRAASFATLPPPALEAVLDMLAGRYPSDDFAELRPRL
VWDRVTGTLTARPGSGRLAVTSGGTIPDRGLFGVFLVGEKASRVGELDEEMVYESRVGDV
VLLGSSSWRIEEITPDRVLVAPAPGRPGKLPFWHGDTLGRPAELGREIGAFTRELARLDS
GQARERLRAAGFDGWATDNLLTYLADQRAATGHLPDDRTIVVERFRDELGDWRLAVHSPV
GAPVTAPWALAIAARLRDRYGVEVQIMHSDDGVVARIPDADLAPTADVVVFDPDEIDALV
RAEVGTSALFASRFRECAGRSLLLPRRTPGRRTPLWQQRQRSAHLLAVAARFDDFPVVLE
TMRECLQDVFDVPALTGLMRQVAARTLRVVEVETAAPSPFARSMLFGYVAAFMYDGDTPL
AERRAQLLALDSSLLTQLLGQADLRELIDAAVLAQVEAELQRLAPDRRARDVEDVADLLR
LVGDLSTPEALARGATPAHLAELADTHRALRVRIAGEERWVAVEDAGRLRDALGIPVPVG
VPTAFTETVRDPLGDLLARYARTHGPFDAEAVADRFGLGVAVVTAGLERMLATGRLVRGE
LRPGGTGEQWCDDTVLRILRRRSLAASRRDVEPVPVTALARFLPAWQGLSRGRDGSHGVD
AVVRAVEQLQGALMPASAWEQLVLPARVADYQPGMLDELCVSGEVLWAGAGGLPGNDGWL
TLVLADSAPLLLPPPVPDAASTPLHAAVLEALDAGAALFFRSLSDRVGSLDDTALAAALW
DLVWAGLVTNDSLAPLRTSLAARRGSHPTARRSPRLRPVRYSRPSMSRPSMPSRTGPPTV
AGRWSLLPARDADPTLHAHAQAEMLLDRYGIVTRGTVTAEGIPGGFAGVYRALSAFEDNG
QCRRGYFVESLGAAQFAVPGAVDRLRAMPATSGALVLAATDPANPYGAALPWPAAQPANA
PGSPGGGHRPGRTPGALVVLVDGELVLYVERGGRTLLTWTDDPERVQPAVDTLALAVRDG
WLGQLSVERADGQAVLTSELRTSELGQALERAGFHPTPRGLRLRA
NT seq 4458 nt   +upstreamnt  +downstreamnt
atgcccgccccgtcccccctcacactgttctcggcccccacccgggcctggttcgccggc
gtgttcaccgcgcccacccccgcgcaggccggcgcctgggaggcgatcagccacggggac
gacgtcctggtcgtcgccccgaccggctcgggcaagacgctcgcggccttcctgtggtcg
ctggaccggatcgcccgcgccggtcccccggccgacgcgtcccggcgctgccgggtgctc
tacgtcagcccgctcaaggccctggccgtggacgtcgaacgcaacctgcgggccccgctg
gccgggatccgggccaccgcggcgcgcctgggccggcccgagcccgacgtgcgggtgggc
atccgctccggcgacacccccgccgccgagcgacggacgttcgggcggctgcccccggac
gtgctcatcaccacgcccgagtcgctgttcctgatcctgaccagccaggcgcgcgaggcg
ctgcgcggggtggagacggtcatcgtggacgaggtgcacgccgtggccggcaccaagcgc
ggcgcccacctcgccctgagcctggaacgcctcgacgcgctgctggacactcccgcccag
cgggtgggcctgtcggcgacggcgcgcccgaccgaggaggtcgcccgcttcctcgggggc
gcccgcgcggtcacggtggtccgcccacccacggggaagaccctgcggatcgacgtggtc
gtgccggtgccggacatgacccagctcgccggcccgaccccggccgcgtcgatctggccg
gccgtggaggaacgcatcctcgacctcgtcctcgcgcaccgctcgaccatcgtgttcgcc
aactcccgccggctggccgaacggctgtgcgcccggctgaacgaggcgtacgcccagcgc
atgcgggacccgtccctcgaggtggcccgggcgcatcacggcagcgtcagccgacagcag
cgggcgctcatcgaggacgatctcaaagccggccgactgcccgcggtcgtggccacctcc
agcctggaactcggcatcgacatgggcgccgtcgacctcgtcgtccaggtcgagtcgcca
ccgagcgtggccgccggcatgcaacgggtgggacgcgccgggcaccgggtcggggccgcc
agccgaggggtgatcatgcccaagcaccgcggcgacctgctgtcgtgcgccgtcgtcgcc
gaacggatgcgcgacggcgggatcgaacagctgcggtatccgcgcaacccgctggacgtg
ctcgcccagcagatcgtggcgatggtcgcgatggatccctggccggtcgacgacatcgcc
gcgctggtccgccgggcggcctcgttcgcgacgctgccgccgcccgccctggaggcggtc
ctggacatgctcgcgggccgctaccccagcgacgacttcgccgagctacgtccccgcctg
gtctgggaccgggtcaccggcaccctcaccgcccggcccggcagcgggcggctggcggtc
accagcggcggcaccatccccgaccgcggcctgttcggggtcttcctggtgggtgagaag
gccagccgggtcggcgaactggacgaggagatggtctacgagtcccgggtcggcgacgtc
gtcctgctcgggtcgtcgagctggcggatcgaggagatcacccccgaccgggtgctggtg
gccccggcgccgggccggccgggcaagctgccgttctggcacggtgacacgctcgggcgt
cccgcggaactcggccgcgagatcggcgccttcacccgtgagctggcccgcctcgacagc
gggcaggcgcgcgagcgcctgcgggcagccgggttcgacgggtgggccaccgacaacctg
ctcacctacctcgccgaccagcgggcggccaccggccatctgccggacgaccggacgatc
gtcgtcgagcgcttccgggacgagctcggcgactggcggctggcggtccactcgcccgtc
ggcgccccggtgaccgcgccgtgggcgctggctatcgccgcccggctgcgcgaccgttac
ggcgtcgaggtgcagatcatgcactccgacgacggtgtcgtcgcgcggatcccggacgcc
gacctcgcccccaccgccgacgtggtcgtgttcgaccccgacgagatcgacgcgctcgtg
cgggccgaggtcggtaccagcgcgctgttcgcgagccggttccgggagtgcgcgggccgg
tcgctgctgctgccgcggcgcacccccggccgccggacgccgctgtggcagcaacggcag
cgcagcgcccacctgctggcggtggcggcccgcttcgacgacttccccgtggtgctggag
accatgcgggagtgtctgcaggacgtcttcgacgttcccgccctgaccgggctgatgcgt
caggtcgcggcccgcacgctgcgcgtcgtcgaggtggagaccgcggcgccctcgccgttc
gcccgctcgatgctgttcggctacgtcgcggcgttcatgtacgacggggacaccccgctg
gccgaacgccgggcccaactgctcgcgctggacagctccctgctcacccagctgctcggc
caggccgacctgcgggagctgatcgacgcggccgtgctcgcccaggtggaggccgaactg
cagcgcctggcacccgaccggcgggcgcgtgacgtcgaggacgtcgccgacctgctgcgc
ctggtcggcgacctcagcacaccggaggcgctggcccgcggcgcaaccccggcccacctc
gccgagctcgccgacacccaccgcgcgctgcgggtacgcatcgccggcgaggaacgctgg
gtggccgtcgaggacgccggccggctgcgcgacgccctcggcatcccggtgccggtcggg
gtacccacggccttcaccgaaacggtccgcgacccgctcggtgacctgctcgcccgctac
gcgcgcacgcacggcccgttcgacgccgaggcggtcgccgaccgcttcgggctgggggtg
gcggtggtgaccgccggcctggagcggatgctcgccaccggccggctcgtccgcggcgaa
ctgcgcccgggcggcaccggcgagcagtggtgtgacgacacggtgttacggatactgcgc
cggcgcagcctcgccgcctcccgccgcgacgtcgagcccgtcccggtgacggcccttgcc
cgtttcctgcccgcctggcaggggctgtcacgcggccgggacggcagccacggcgtcgac
gcggtggtgcgggccgttgagcagctgcagggcgcgctgatgccggccagcgcctgggag
caactcgtcctgcccgcccgggtggcggactaccagccggggatgctcgacgagctgtgc
gtgtccggtgaggtgctgtgggccggtgcgggcgggctgcccggcaacgacggctggctg
accctggtcctcgccgacagcgctcccctgctgctgccaccgcccgtcccggacgcggcg
agcacccccctgcacgccgccgtgctcgaggccctcgacgcgggggccgccctgttcttc
cggtccctctccgaccgggtcggcagcctcgacgacaccgcgctcgcggccgcactgtgg
gatctggtgtgggcgggcctggtcaccaacgacagcctcgccccgctgcggacctcgctg
gccgcccgccgcggcagccatccgaccgctcggcgcagcccccggctgcgcccggtgcgc
tactcccgtccgagcatgtcccgtccgagcatgccgtcgcggaccggcccgccgacggtg
gccggccgctggtcactgctgcccgcacgggatgccgacccgacgctgcacgcccacgcg
caggccgagatgctgctcgaccggtacgggatcgtcacccgcggcacggtcacggccgag
gggatcccgggcggtttcgccggggtgtaccgcgccctgtccgccttcgaggacaacgga
cagtgcagacgtggatacttcgtggaatccctcggcgcggcccagttcgccgtccccggt
gcggtcgaccggctgcgggcgatgccggcgacgtccggcgcactcgtgctcgccgcgacc
gacccggcgaacccctacggcgccgccctgccctggccggcggcccagccggccaacgcc
cctggctcccccggcggggggcaccggccgggacgcacaccgggtgcgctcgtcgtgctc
gtcgacggcgaactggtgctctacgtcgaacgcggcggccggacgttactgacctggacc
gacgaccccgaacgggtgcagccggcggtcgacaccctcgcgctcgccgtgcgggacggc
tggctgggacagctgtccgtggagagggccgacggccaggccgtgctcaccagcgaactg
cgcaccagcgaactcggccaggccctggaacgcgccggcttccatcctacaccgcgcggc
ctgcggctacgggcctga

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