Candidatus Protofrankia datiscae: FsymDg_3633
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Entry
FsymDg_3633 CDS
T01530
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fsy
Candidatus Protofrankia datiscae
Pathway
fsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FsymDg_3633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsy03019
]
FsymDg_3633
03016 Transfer RNA biogenesis [BR:
fsy03016
]
FsymDg_3633
Enzymes [BR:
fsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FsymDg_3633
Messenger RNA biogenesis [BR:
fsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FsymDg_3633
Transfer RNA biogenesis [BR:
fsy03016
]
Prokaryotic type
tRNA degradation factors
FsymDg_3633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
S1_RRP5
KH_2
KH_KhpA-B
aRib
Motif
Other DBs
NCBI-ProteinID:
AEH10912
UniProt:
F8B3B0
LinkDB
All DBs
Position
complement(4286005..4288206)
Genome browser
AA seq
733 aa
AA seq
DB search
MVPVEDQTISAEAVIDNGAAGQRTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPK
EQLDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEI
QIVATVLALDPDTLYDVVAINAASASTTLAGLPFSGPIGATRVGYVDGTWIAFPTHAELE
RATFDMVVAGRVLDDGSDVAIMMVEAEATAHTIPLLAAGSPAPTEDVVAAGLEAAKPAIR
ELCRAQRGLAERAAKPTRDFPLFIDYHDDVLEALSIAVGDELAAALRIAGKQEREAELDR
VRLLAAEKVVGQFEGREKEIGAAYRALTKKLVRQRIVADGVRIDGRGVTEIRELAAEVDF
IPRVHGSALFERGETQILGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRV
GSPKRREIGHGALAERALLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNA
GVPLKAAVAGIAMGLIREGDQFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDG
IPATVLAGALQQARAARLAILDVMAEAIDGPDEMSTHAPRVISVKIPVDKIGEVIGPKGK
MINQIQADSGAEITVEDDGTIYIGAQDGVSAESARSAINAIANPQLPEVGERYLGTIVKI
TIFGAFVSLTPGKDGLLHISKLKQLSGGKRVEKVEEVVQVGQKLQVEITDIDSRGKISLS
PVVEDADGVPVGA
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggtgccagtagaagaccagacgatctcggccgaggcagtcatcgacaacggtgccgcc
ggccagcggaccgttcgtttcgagacgggccggctggcccgccaggcggccggctcggcc
gtcgcctacctgggcgacacgatggtgctgtccgcgacgacggtcagcaagcagcccaag
gagcagctcgacttcttcccgctgacggtggacgtcgaggagcggatgtacgccgccggg
cgtattcccggctcgttcttccggcgggaggggcgtcccagcgaggacgcgatcctgacc
tgccgcctgatcgaccgcccgttgcggccgtcgttcgtcaagggcctgcgcaacgagatc
cagatcgtggcgacggtgctcgccctcgacccggacacgctctacgacgtggtcgcgatc
aacgccgccagcgcgtccacgacactggccgggctgccgttctcaggcccgatcggggcc
acccgggtcggctacgtggacgggacctggatcgccttcccgacccacgcggagctggag
cgggccaccttcgacatggtcgtggccggccgcgtcctcgacgacggctccgacgtcgcg
atcatgatggtcgaggcggaggccaccgcgcacacgatcccgctgctcgccgcgggctcg
cccgcgccgaccgaggacgtcgtggccgcgggcctggaggcggccaagcccgccatccgg
gagctgtgccgggcccagcgcggactggccgagcgggcggccaagcccacccgcgacttc
ccgctgttcatcgactaccacgacgacgtgctggaagcgctgtcgatagctgtcggcgac
gagctggccgcggccctgcgcatcgcaggcaagcaggagcgggaggccgagctcgaccgg
gtccgcctgctggccgcggagaaggtcgtgggccagttcgagggccgggagaaggagatc
ggggcggcctaccgcgccctgaccaagaagctggtgcgccagcgcatcgtcgccgacggc
gtccgcatcgacgggcgcggggtcaccgagatccgcgagctggcggcggaggtcgacttc
atcccccgggtgcacggctccgccctgttcgagcggggcgagacccagatcctcggcgtg
accaccctggccatgctgcggatggagcagacggtcgacacgctcaatcccgaccgcacc
aagcgctacatgcacaactacaacttcccgccgtactccaccggggagaccggtcgggtg
ggctcgccgaagcggcgtgagatcggccatggcgcgctggccgagcgggcgctgctgccg
gtgctgcccagccgggaggagttcccgtacgcgatccggcaggtctccgaggcgctgggc
tccaacgggtcgaccagtatgggatcggtctgcgcgagcacgttgtcgttactgaatgcc
ggtgtcccgctcaaggccgccgtcgccgggatcgcgatggggctcatccgcgagggtgac
cagttcgtcacgctcaccgacatcctcggtgccgaggacgcctacggcgacatggacttc
aaggtcgccgggacgcgggagttcgtcacggccctccagctcgacacgaagctggacggc
attcccgccaccgtcctcgccggcgcgctccagcaggccagggccgcgcggctggcgatc
ctcgacgtcatggccgaggccatcgacgggccggacgagatgtccacccacgcgccacgg
gtcatctccgtcaagatcccggtggacaagatcggtgaggtcatcggcccgaagggcaag
atgatcaatcagatccaggcggacagcggggccgagatcaccgtcgaggacgacggcacc
atctacatcggcgcgcaggacggcgtctccgccgagagcgcccgttcggcgatcaacgcg
atcgccaacccgcagctccccgaggtcggggaacgctacctgggcacgatcgtcaagatc
acgatcttcggcgcgttcgtctcactgaccccgggcaaggacgggctcctccacatcagc
aagctcaagcagctttccggagggaagcgggtggagaaggtggaagaggtggtacaggtc
ggccagaagctccaggtcgagatcaccgacatcgacagccgcgggaagatcagcctgagt
cccgtggtcgaggacgccgacggcgtcccggtcggggcctga
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