Candidatus Protofrankia datiscae: FsymDg_3970
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Entry
FsymDg_3970 CDS
T01530
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fsy
Candidatus Protofrankia datiscae
Pathway
fsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FsymDg_3970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsy03021
]
FsymDg_3970
03400 DNA repair and recombination proteins [BR:
fsy03400
]
FsymDg_3970
Enzymes [BR:
fsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FsymDg_3970
Transcription machinery [BR:
fsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FsymDg_3970
DNA repair and recombination proteins [BR:
fsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FsymDg_3970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEH11245
UniProt:
F8AV32
LinkDB
All DBs
Position
complement(4650998..4654891)
Genome browser
AA seq
1297 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITNVDTDARHRDLSTLEARISVEKQHLEDKKNADVETRQKKLEAD
LAQLEAEGAKGDVRRKVREAAEREMRQIRDRAQRKIDDLDRVFDRFKSMKVQDLEPDELL
YRELRDRFGQYFEGGMGAEALQRRLVDFDLAAEAESLRETIRSGKGQKKARALKRLKVVS
AFLNTRNSPNGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRMAAGARGEGR
AFSSVAEAQMAFDAREIELQAKIKVRLRDTTPPLDWTPPPGWATGDLFTLETTFGRCLLN
QALPEGYPFLNYLMNKKAQAAIVNDLAERYPKIQVAATLDALKSAGFYWATRSGVTVAIE
DVVAPPNKAQILDEYEQRAERVQKQFDRGFLSDDERRAELVQIWNEATNKVAEAMEANFP
ETNPVAVLVNSGAAGNMMQIRQLAGMRGLVANPKGEIIPRPIKANFREGLSVVEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTERGIATRIARKGADGVLVRDR
YAETAAYARTLASDAANAAGDVVVPAGTDLGDVVIGKIIDAGIESVKVRSALTCAARMGV
CAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVVE
LFEARSPKGKAPISEVSGRVRIEETEKTVKVVVIPDDGSEEISYPVSRRSRLKVEEGQRI
AVGQKIVDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQGVSIHDKHIEIIIRQMLKRV
NVLESGETTLLPGELVERARFEEENRRVVETGGQPASARPVLMGITKASLATESWLSAAS
FQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGISRYRNIRVEPTEEARASVYSV
SGYDEGASVEYGAFGTGSGQAVPLDDFDYRSTGGDYR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctcgccacggcggacgacatc
cgccagtggtcacacggcgaggtcaagaagccggaaacgatcaactaccgtaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggaatgc
tactgcggtaagtacaagcgcgttcgtttcaagggcatcatctgcgagcgctgcggtgtc
gaggtcacccgcgccaaggtgcgtcgggaacggatgggccacatcgagctggccgcgccg
gtcacccacatctggtacttcaagggtgtcccgagccggctcggctacctgctcgacctg
gcgccgaaggaccttgagaaggtcatctacttcgccgcctacatgatcacaaatgtggac
acggacgcgcgccaccgcgacctgtccaccctcgaagcccggatctccgtcgagaagcag
cacctcgaggacaagaagaacgccgacgtcgagacccggcagaagaagctggaagccgac
ctcgcccagctggaggccgagggcgccaagggcgacgtccggcgcaaggtgcgggaggcg
gccgagcgcgagatgcgccagatccgcgaccgcgcgcagcggaagatcgacgatctggac
cgggtgttcgatcgtttcaagagcatgaaggtccaggacctcgagccggacgagctgctc
taccgcgagctgcgggaccggttcggccagtacttcgagggcggtatgggggccgaggcc
ctgcagcgccggctcgtcgacttcgacctggcggcggaggccgagtcgctgcgggagacc
atccgcagcggcaagggacagaagaaggcccgggcgctgaagcgtctcaaggtcgtctcg
gccttcctcaacacccgcaactccccgaacgggatggtgctcgactgcgtcccggtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgccacgtccgacctc
aacgacctctaccgccgggtgatcaaccggaacaaccggctcaagaggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtgaccgggccgggcaaccgtccgctgaag
tcgctgtcggacatgctcaagggcaagcagggccggttccggcagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcactcgagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtggagcgggcccgc
ccggtcgtctgggacgtcctcgaagaggtcatcaccgagcaccccgtgctgctcaaccgc
gcgccgaccctgcaccggctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggggaccag
atggccgtacacctgccgctgtccgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgagcaacaacatcctctcgccggcgtccgggcgtccgctggccatgccgagcctggac
atggtgaccggggtgttccacctcagccggatggccgcgggtgcccgcggcgagggccgg
gcgttctccagcgtggccgaggcgcagatggccttcgacgcccgggagatcgagctccag
gcgaagatcaaggtgcggctgcgcgacaccacgccgccgctggactggaccccgccgccc
ggctgggccaccggcgacctgttcaccctggagacgaccttcggtcgctgcctgctcaac
caggcgctccccgagggctacccgttcctgaactacctgatgaacaagaaggcccaggcc
gcgatcgtcaacgacctggcggagcgctacccgaagatccaggtggccgcgacgctggac
gcgctgaagagcgccggcttctactgggccacccgctcgggggtgaccgtcgcgatcgag
gacgttgtcgcgccgccgaacaaggcgcagatcctcgacgagtacgagcagcgggccgaa
cgggtgcagaagcagttcgaccgcggcttcctctccgacgacgagcgccgtgccgagctg
gtccagatctggaacgaggcgacgaacaaggtcgccgaggccatggaggccaacttcccg
gagaccaacccggtcgccgtgctggtcaactccggggccgccggaaacatgatgcagatc
cggcagctcgccgggatgcgcggactggtcgccaaccccaagggcgagatcatcccacgt
ccgatcaaggcgaacttccgcgaagggctgagcgtggtggagtacttcatctccacgcac
ggcgcccgcaagggtctggccgacacggcgctgcggaccgcggactccgggtacctcacc
cggcgtctggtcgacgtcagccaggacgtcatcgtccgtgaggacgactgcggcaccgag
cgcggcatcgccacccgcatcgcgcgcaagggagcggacggcgtgctcgtccgcgaccgt
tacgccgagaccgcggcctacgcgcgcacgcttgcctcggacgcggcgaacgccgccggt
gacgtggtggtaccggccggcaccgacctcggcgacgtggtcatcggcaagatcatcgat
gccgggatcgagtcggtgaaggtgcgttccgccctcacctgcgcggcccggatgggtgtc
tgcgcgcagtgttacggccggtcgctggccacgggcaagctcgtggacgtcggcgaggcc
gtcggtatcgtcgccgcccagtccatcggtgagcccggcacccagctgacgatgcgtacc
ttccacagcggtggcgtcgccggcgacgacatcacccagggtctgccccgtgtcgtggag
ctgttcgaggcccgttcccccaagggcaaggccccgatcagcgaggtctccgggcgggtg
cgcatcgaggagaccgagaagaccgtcaaggtcgtggtcatccccgacgacggcagcgag
gagatctcctacccggtctcccgccggtcgcggctgaaggtcgaggagggccagcgcatc
gcagtcggtcagaagatcgtcgacggcgcggtcgacccgcacgaggtgctgcgcatcctc
ggcccgcgtcaggtgcagctccacctggtcgaccaggtgcaggaggtgtaccgctcgcag
ggtgtgtccatccacgacaagcacatcgagatcatcatccggcagatgctcaagcgggtg
aacgtgctggagtcgggggagaccacgctcctgccgggcgaactggtcgagcgggcccgg
ttcgaggaggagaaccgtcgggtggtcgagaccggcggccagccggcttcggcccgtccg
gtcctgatggggatcaccaaggcgtccctggcgaccgagtcgtggctgtcggcggcatcc
ttccaggagacgacccgggtgctcaccgacgccgcgatcaacgcccggtcggactcgctg
gtcggcctgaaggagaacgtcatcatcggcaagctcatcccggcgggtaccggcatctcg
cggtaccgcaacatccgggtcgagccgaccgaggaggcacgggcgtcggtgtactcggtc
agcggctacgacgagggcgcgagcgtggagtacggcgcgttcggcaccggcagcggccag
gccgtcccgttggacgacttcgactaccgcagcaccggcggcgactaccggtag
DBGET
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