Candidatus Protofrankia datiscae: FsymDg_4447
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Entry
FsymDg_4447 CDS
T01530
Name
(GenBank) helicase domain-containing protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
fsy
Candidatus Protofrankia datiscae
Pathway
fsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FsymDg_4447
09124 Replication and repair
03420 Nucleotide excision repair
FsymDg_4447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsy03021
]
FsymDg_4447
03400 DNA repair and recombination proteins [BR:
fsy03400
]
FsymDg_4447
Enzymes [BR:
fsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FsymDg_4447
Transcription machinery [BR:
fsy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FsymDg_4447
DNA repair and recombination proteins [BR:
fsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FsymDg_4447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEH11696
UniProt:
F8AZZ9
LinkDB
All DBs
Position
complement(5192744..5194390)
Genome browser
AA seq
548 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHPLAGDARAMIAPFAELERSPEHVHTYRITPLALWNARAAG
HDAEQVVDALVRFSRYAVPHALLVDIADTMDRYGRLRLENDPAHGLVLRTVDRAVLTEVV
RSKKVAPMLGPRLDDDCVVVHPSERGRLKQALLKIGWPAEDLAGYVDGEAHPIELRQDGW
ELRDYQKGAVAGFWEGGSGVVVLPSGAGKTIVGAAAMAHARATTLILVTNTVAGRQWRSE
LLRRTSLTEEEIGEYSGERKEIRPVTIATYQVMTARRKGEYLHLELFGARDWGLIVYDEV
HLLPAPVFRMTADIQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWREIEAQGWIAP
AECTEVRVTLTEDERMAYAVAETEERYRMCATAHSKREVVRRLVQRHADDQVLVIGAYLD
QLDQLGELLDAPVIQGSTRNRERERLFEAFRTGEIRTLVVSKVANVSIDLPEAAVAIQVS
GTFGSRQEEAQRLGRVLRPKADGRGAHFYTVVSRDTIDQEYAAHRQRFLTEQGYVYMIVD
ADDIPDPA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggtccgttgatcgtccagtcggacaagaccctgctgctagaagtcgatcat
ccgctggccggcgacgcccgagccatgatcgcgccgttcgcggagctggaacgttcaccc
gagcacgtgcacacctaccggatcaccccgttggcgctgtggaacgcccgggccgccggc
catgacgccgaacaggtcgtcgacgcgctcgtccggttctcccgctacgccgttccgcac
gcgctgctcgtcgacatcgccgacaccatggaccgctacggccggctgcggctggagaac
gacccggcgcacgggctggtgctgcgcaccgtcgaccgcgcggtgctcaccgaggtcgtc
cggtcgaagaaggtcgcgccgatgctcgggccgcgccttgacgacgactgtgtcgtggtg
cacccgtccgagcggggacggctcaagcaggcgctgctgaagatcggctggccggccgag
gacctggccggttacgtcgacggcgaggcgcacccgatcgagctgcgccaggacggctgg
gagctgcgcgactaccagaagggcgcggtggcgggtttctgggagggcggctcgggtgtg
gtggtgctgcccagcggtgccggcaagaccatcgtcggagccgccgccatggcgcacgcc
cgcgccaccaccctgatcctggtcaccaacaccgtcgccggccgccagtggcgctcggag
ttgctgcggcgcacgtcgctcaccgaggaggagatcggcgagtactccggcgagcgcaag
gagatccggccggtcaccatcgccacctaccaggtgatgacggcccgccgtaagggcgag
tacctgcacctggagctgttcggcgcccgcgactgggggctgatcgtctatgacgaggtg
cacctgctgccggcgccggtcttccggatgaccgccgacatccagtcccgccgccggctc
ggcctgaccgcgaccctggtgcgcgaggacggccgggagggcgacgtcttctcgctgatc
ggccccaagcggtacgacgccccctggcgcgagatcgaggcgcagggctggatcgcgccg
gccgaatgtaccgaggtgcgggtgaccctcaccgaggacgagcggatggcctacgccgtc
gccgagacggaggagcgctaccgcatgtgcgccaccgcccacagcaaacgggaggtggtg
cgccggctggtgcagcggcacgccgacgaccaggtgctcgtcatcggcgcctacctcgac
cagctcgaccagctcggcgagctgctcgacgccccggtcatccaggggtcgacccgcaac
cgggagcgcgaacgcctgttcgaggcgttccggaccggggagatcaggacgctggtcgtc
tccaaggtcgcgaacgtgtcgatcgacctgccggaggcggcggtcgccatccaggtcagc
ggcacgttcgggtcacgccaggaggaggcgcagcggctcgggcgggtgctgcgcccgaag
gcggacggccggggcgcgcacttctacaccgtggtctcccgggacacgatcgaccaggag
tacgccgcgcaccgccagcgcttcctcaccgagcagggctacgtctacatgatcgtggac
gctgacgacatccccgatcccgcgtaa
DBGET
integrated database retrieval system
