Francisella tularensis subsp. novicida F6168: AS84_1041
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Entry
AS84_1041 CDS
T03873
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ftd
Francisella tularensis subsp. novicida F6168
Pathway
ftd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS84_1041 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftd03019
]
AS84_1041 (rnr)
03016 Transfer RNA biogenesis [BR:
ftd03016
]
AS84_1041 (rnr)
Enzymes [BR:
ftd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AS84_1041 (rnr)
Messenger RNA biogenesis [BR:
ftd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AS84_1041 (rnr)
Transfer RNA biogenesis [BR:
ftd03016
]
Prokaryotic type
tRNA degradation factors
AS84_1041 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Ras
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
AJI44651
LinkDB
All DBs
Position
1079957..1082254
Genome browser
AA seq
765 aa
AA seq
DB search
MSKYSIHNDPNKDIEAQKYENPIPSREVILNYIRDVKLPVSIENIANALEIFKKNLFDGL
VNRLGAMVRDGQLEKDRSYYNLPEMAPIYITSKVTADRDSRLELFSHTLNTKVSIVSHQA
KMVMVGDEVTAKVLGLNKRGRIDAEIKTIVTRAQKTVTGYYYKSFDCDFIKPISKSIISD
IVLLPPKQKIEHNSLIEAEIIVYPSISSAAVAKFKQEVEAVSPVKEAMMMATQKYDLIEQ
WSKKALRYLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAI
ADVSNYVEKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNI
SKEGKLSRYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLH
QARQERGAIDFDTVETQIILDEHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQ
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGAADY
KPSELANICENASDQERNADAASKQVENWLKCYFMQDYIGHILEAQIKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLERIHIDFEL
YDPRKPFAENSSDKPFAKKTKKLKKAKKKKVRSRKKNKTKAKLAH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagtacagcatacataatgatccgaataaggatattgaagcgcaaaaatatgaa
aatccaattccaagtagggaagtgattttaaattatataagagatgtaaaacttcctgta
agcattgagaatatagcaaatgctttagagatttttaaaaaaaatcttttcgatggtctt
gtgaatcgtttgggtgcaatggttagagatggtcagctagagaaggatagatcatattat
aatttgccggaaatggcgccaatatatatcacatctaaagttactgcagatagagattct
cgtttagagctatttagtcatactctaaatacaaaggtaagtatagtatctcatcaagca
aaaatggtaatggttggtgatgaggtaactgcaaaagttcttgggcttaataagcgtggt
cgaatagatgctgaaattaaaaccatagtgacaagagctcagaagacagtcacgggctat
tattataagagctttgattgtgattttattaagccgataagcaaaagcataataagtgac
atagtgctattaccaccaaagcaaaaaatagagcataactctttaatagaagctgagatt
attgtttatcctagtataagtagtgcagctgttgctaaatttaagcaagaggtcgaagca
gtatctccagttaaagaagcgatgatgatggcaacacagaagtatgatttaattgagcag
tggagtaaaaaggctttacgctatttagataatatttctgatgacgtggttgttggcaac
agggttgatctacgtaatcaacactttgtaacaattgatggtgaagatgctaaggatttt
gatgatgctgtttatgcacacaagactaaaagtggtagttggaagttatatgtagcaatt
gcagatgtctcaaactatgttgagaaagattcagctttggatttagacgctaagcgtcgt
tctacttcagtgtatttccctggttatgtgataccaatgctaccagagaaattatcaaat
ggtttatgttcattaagaccaaacgaagatagatattccttagtctgtgagatgaatatt
agtaaagaaggtaaactttctaggtataagttttattctgctgtaataaactcaaaggca
cgcttaacttatacagaagttgctaaacttttagaaaagaaacaaaacactatagttgag
aatactcctgagctagtacctaatatatttgatttatacgagttgtataaagtacttcac
caagctaggcaagaacgaggtgctatagactttgatacagttgaaacacagataattctt
gatgagcataatcatattgagtcaattgtaccaaggcatcgtaatgatgcacataggctt
attgaagagtgtatgcttgttgctaacgttgcagcagctaagtttactattaagcataaa
aagacatcaccatttagagttcatagtgagcctaaagaagatagaatggaaactcttaag
aagtatcttgctaagcatggtatacatcttgcttatggtaagaatggtaaagtgactccc
aaagctttagcacaaatgctagatagtataaaagatcgtcctgattatgatgatattcag
atgatgactttacgtagtatgaatcaggctgtatatagcataaataatgatggacacttt
ggactagcatatagtgaatatacgcatttcacctcaccaattcgtagatatccagattta
gtagtacacagaataataaaatcaattattggtgaatatgagcatggtgctgctgattat
aaaccttctgaattggcaaatatttgtgaaaatgcctctgatcaagagcgaaatgctgat
gcagcctctaagcaagttgagaattggttgaagtgctactttatgcaagactacattggc
catatacttgaagctcaaattaagcatgttaatggtttaggtctttttgctgaactaaaa
gatatgtacatagaaggtctgatacatgtatcagctattcctggtgattactatatttat
gatgaagccaaagatatattaattggtaaacgaacccataaagtctataaaattggtcaa
gatatcacagtaagagttgtccgagcagatctcgaaagaattcatatagattttgagctg
tatgatccacgtaagccatttgctgagaatagctcagataagccatttgcaaaaaaaaca
aaaaaacttaaaaaagctaaaaagaagaaagtaagaagtagaaaaaagaataaaacaaaa
gcaaaattagcacactaa
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