Francisella tularensis subsp. novicida F6168: AS84_1268
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Entry
AS84_1268 CDS
T03873
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ftd
Francisella tularensis subsp. novicida F6168
Pathway
ftd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS84_1268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftd03019
]
AS84_1268
03009 Ribosome biogenesis [BR:
ftd03009
]
AS84_1268
Enzymes [BR:
ftd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AS84_1268
Messenger RNA biogenesis [BR:
ftd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AS84_1268
Ribosome biogenesis [BR:
ftd03009
]
Prokaryotic type
rRNA processing factors
AS84_1268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Antiterm
DnaJ_CXXCXGXG
Flu_C_NS1
Motif
Other DBs
NCBI-ProteinID:
AJI45922
LinkDB
All DBs
Position
complement(1320373..1323030)
Genome browser
AA seq
885 aa
AA seq
DB search
MKRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHD
FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF
QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQAASNTQEQKPQT
DAQVDIATQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ
RQQQHNKAQKDNNQRNERNNNNNKNERNKNRNNKGAKPQIAQENKPQKDNSQRSDLNANG
NSNNDKNERNKNKSNNDKFDKKSNNRNSRSNNLNLNNAEEVIDITQLKYQNQTAIAKTDN
IKKVISKNPDEFISVMVKDVLENYDSLKDDGATKIATQEKIKTNKYLKFDTVSVDTEIAL
LNEVAKSNQTVEVEQITAETEESLSIVDKVDDITIPEVVVEQEKPAKVVKETNQTSEAKP
KKEKQTTTKNNKKEKPAEKEMKQNQAKPEYINYSPAIDFESQALI
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatactaataaatagcaagagtggcgaagaaacaagaattgccaccctagat
aatggcaaattaatagatttagacattgagagcgttgatagagaacaaaaaaaagcaaat
atttacaaaggttatatttcaagaattgaaccaagtttaaatgctatatttgttaactat
ggtgaagaaaaaaatggttttttaccatttaaagaagtatcagagtattacctaaaagat
gttccaaacggtgaaaatattgcacctttgctttcagaagggcaagaattaattgttcaa
atagataaagaagaacgaggcgataaaggtgcagcattaactacatttattaccttggct
ggttcgtatatggtgttattaccaaataatcctgagggcggtggtatttctcgtcgtgtc
gaaggtgaagatagagaaagattaaaaaaatatctcaaagaattaaatatcccaaaaaat
atgagcgtaatagcaagaactgcttgcgttgagtgctcttttgaagaattaaaacatgat
tttgatactctagttgaattatggggatctatttcacaagcttaccatagaatcaaaaaa
ccagctttattacataaagaaagtgacattattgtaagaacagttagagatcacttaaaa
gaagatgttaaagaaatcatcgttgattctaaagagtgctttgaagatgtcaaaagacag
cttagtttacttagacaaagctttgatataaataaagtaaaactatacaacgaagaatta
ccactatttgctcagtttggcattgatcaacaaatagaaaatgcttataaaagagaaatt
cgcctaccatctggcggctctatcgtaatagatactacagaggcacttgtagcaatagat
gtaaactcatctcgcgctaacaaagccgaagatgtagaaactacagcatttaaaactaac
ctagaggctgcggaagaagttgctcgtcaacttagaattagagacttaggtggtcttgtt
atagttgactttattgatatgtctttctacccgaatcgaaaacaagtcgaagaaaaacta
atggaagcgctacagcaagatagagcacgtatccaaatgtcacgtatttccaaacttgga
ctagttgagatctcaagacaacgtttaagttcttcaattaacgaaagcgtaatgcaaaaa
tgtccacgttgtgagggtcatggttttatcaaaactacacaagctacagcacttaccatc
ctacgtaaaatcagagcagaggctatcaaagaagataccaacgaaattcgtgtccaagtt
cctgtagatatcgccgcatatatactaaatgaaaaaagagatagtatcattgagattgag
agaatttctcaagttaaggttatgattattcctaactttaatatggaatcgccaaagttt
caaatgcagagaatctggggtactagctacaaatcaaatcgtacaagctcagaattaata
gaagatgtttataatattgaaattcctaaagctggtaagaaaaaagttgcggctgtggat
ttaaatcaagctattgaaaatcaagctgctagcaacactcaagaacaaaagcctcaaact
gatgctcaagtagatatagctacacaaaatgataaaaaacaagatgatgtaactcaacaa
gctaagaaaaaaggcttctttgctaggctttttagcggtatatttgcaactgattcaaaa
gctgctcagcaagctaataactcagctcaaaaacaacaaaacaaagaacagaatttccaa
aggcagcaacaacataataaggcgcaaaaagataataatcagcgtaatgagcgtaacaat
aacaacaacaaaaatgagcgcaataaaaatagaaacaataaaggagcaaaaccacaaata
gctcaagaaaataaaccacaaaaagacaatagccaacgtagtgatctcaatgctaatggt
aacagtaacaatgataaaaatgagcgcaataaaaataaatcaaacaatgataagtttgat
aaaaaatcaaataaccgtaacagcagaagcaataatttaaatctaaataatgctgaagaa
gttattgatattacgcaacttaagtatcaaaatcaaacagctattgcaaagacagataat
atcaaaaaggtgatttcgaagaatcctgatgagtttatctctgtaatggttaaagatgtc
ttagaaaactatgatagtctaaaagacgatggtgctacaaagatagctacccaggagaaa
attaaaactaacaaatacttaaagtttgatactgtatctgtagatactgaaatagctcta
cttaatgaagtcgctaaatcaaatcaaactgttgaagttgagcaaatcacagctgaaaca
gaagaatctttaagtatcgttgataaagttgatgacataacaataccagaagttgtagta
gagcaagaaaagccagcgaaagtagttaaagaaactaatcaaactagtgaagctaaacct
aaaaaagaaaagcaaactactacaaaaaataataagaaagaaaaaccagctgaaaaagag
atgaaacaaaatcaagctaaacctgaatatataaactattcaccagcgattgattttgaa
tctcaagcactaatatag
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