Fluviicola taffensis: Fluta_1565
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Entry
Fluta_1565 CDS
T01455
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fte
Fluviicola taffensis
Pathway
fte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Fluta_1565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fte03400
]
Fluta_1565
Enzymes [BR:
fte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fluta_1565
DNA repair and recombination proteins [BR:
fte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Fluta_1565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEA43557
UniProt:
F2IF83
LinkDB
All DBs
Position
1780414..1783755
Genome browser
AA seq
1113 aa
AA seq
DB search
MEQTQFLQLFKKLKGLDETANLLQQAEIRIHWKGLIGSSKSIAVASVCEQVPGNHLFVLE
DKESAAYFLNDLEQLLPDNKHIYFYPASYRTPYQLEETDNANVVARAEVLEKINTGKNTW
VVTYPQALFERVPTQKRLSENTMRVERGKTYSIDFFNELLLEYGFERVDFVYEPGQFSIR
GGIVDIFSFSNDQPFRVEFFGDEVDSIRTFDPVSQLSINTHTHFSVVPNVQRQLVLNGNG
TFLEFIGKQTTIWLASNDLVKAALEKDYEKAVKVYDSLPKNTIKHSLPSELYMHPSDWKE
QLPVHSIVEIGPEYTFKASETITFETLHQPTFNKDFDLLKEDLLARRKAGATNMIFSNQP
KQIERLYQIFEDIGAEVEFEPMNSALHEGFIIPSLKLVCYTDHQIFERYHRFKLKEGFRQ
AKQALTLKEIYNLQKGDYVTHIDHGVGQFSGLQTIDVSGKQQEAIRLVYRDGDVLYVSIH
SLHRISKFTGKDGAAPKMNKLGTQAWATLKQKTKKRIKELAFDLIQLYAKRKSQPGFAFS
PDTYLQNELEASFMYEDTPDQLKATQAVKEDMEKETPMDRLVCGDVGFGKTEIAMRAAFK
AVADSKQVAVLVPTTILSHQHARSFKERFKNFPANVDYINRFKSAKEITATLKKVESGEV
DILVGTHKIVSDKVKFKDLGLIIIDEEQKFGVAVKDKLKTLKTTVDTLTLTATPIPRTLQ
FSLMGARDLSIINTPPPNRQPVLTEVITFNEEAIRDAISYEVSRGGQVYFVNNRLANIKE
IAGMISRLCPGVRVAIGHGQMDGKQLEKVMMDFIQGEYDVLIATTIIESGIDISNANTII
INDSHMFGLSDLHQLRGRVGRSNKKGFCYLISQPISLLTSEARKRLEALVQFSDLGSGFN
IAMKDLDIRGAGNLLGGEQSGFISEIGFEMYQKILNEAMDELKEEEFKDLYDDRNTESMG
AHYVKDCVLETDFELRITEDYINNVSERLSIYQDLDNLNTKEEIEGYKQQLIDRFGPLPR
VVKELLRSFELRWLAQEIGFEKLVIKQGSMIGYFVASSQSKYYDSPMFTRVLKYVQTNPK
DCKMSEKNDRLRMLYSNVMNMDQAFERLGEIIN
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggaacagacacaatttttacaacttttcaaaaagctcaaaggactcgatgaaactgca
aacttattgcaacaagcggaaatccgcattcactggaaaggattaattggttcttctaag
tcaatcgcagtggcttcggtgtgtgaacaagttcccggaaatcatttatttgtattggag
gacaaggaatctgccgcatactttttgaacgatttagaacaactgcttccagacaataaa
cacatctatttttacccagcttcttaccgaacgccttaccagctagaggaaaccgataat
gcaaatgtggttgctcgagctgaagtattggaaaaaataaatactggaaaaaatacgtgg
gtggttacctatccacaagccctatttgagcgcgttccaacgcagaaacgactttcagaa
aacaccatgcgtgtggagcgaggcaaaacctattcgattgactttttcaatgagttgttg
ttggaatatggattcgaacgtgtagattttgtctatgagccaggtcagttttctattcgt
gggggaattgtagatattttctcgttttctaacgatcaacctttccgcgtagagtttttt
ggtgacgaggtagattcgattcgaacatttgatcccgtttcacaattatcgattaatacg
catacacatttttcagtagttccgaacgtacaacgccaattggttttgaatggaaatgga
acgtttttggaattcattgggaaacaaacaaccatttggttggcttcgaatgatttggtg
aaagcggctttggaaaaagattatgaaaaggctgtaaaggtttatgactctttgccgaag
aatacaattaaacacagtttgccaagcgaattgtatatgcatccttctgattggaaggaa
caattgccagtgcactcgattgtggaaattggacctgaatacactttcaaagcttccgaa
acaattacatttgaaacacttcatcagccgacatttaataaagatttcgatttgttgaaa
gaagatttgctagcccgtagaaaagcaggcgctacaaatatgattttttccaatcaaccc
aaacaaatcgaacgcttgtaccaaatttttgaagacattggcgcggaagtggaatttgaa
ccgatgaatagtgcacttcacgaaggattcatcattccaagtttgaagttggtttgttac
acagatcatcaaatttttgagcgctatcaccgatttaagctgaaagaaggattccgccaa
gcgaaacaagcactgacattaaaggaaatttacaacctccaaaaaggagattatgtaacg
catatcgatcatggggttggccaattttcaggcttgcaaaccattgatgtaagtgggaaa
cagcaggaagctattcgtctggtttatcgagatggcgatgtgttgtatgtgagtattcac
tcgcttcaccgcatttcgaagtttacaggaaaagacggcgctgcgccgaagatgaataaa
ttgggaactcaggcttgggctactttgaagcaaaaaaccaaaaagcgcatcaaagaattg
gccttcgatttgattcaattatatgcaaaacgcaaaagtcaaccaggatttgcgttttct
cctgatacttacttgcaaaacgaattggaagcatccttcatgtacgaggacactccagat
cagttaaaagcaacacaagcggtaaaggaagacatggaaaaagagactccgatggatcgc
ttggtttgtggagacgttggttttggaaaaacggaaattgctatgcgtgcggctttcaaa
gcggttgctgacagcaaacaggttgcagttctggttcccacaacgattttaagtcatcaa
catgcgcggagtttcaaagaacgtttcaagaattttcccgcgaatgtagattacatcaat
cggtttaaatcggcgaaggaaattacggctacgttgaaaaaagtggaaagtggtgaggtg
gatattttggtgggaacacacaaaattgtcagtgataaagtgaaattcaaagatttgggt
ttaatcattatcgacgaagaacaaaaatttggggtggctgtaaaagacaaattgaaaacc
ctcaaaacaactgtcgacacacttaccttaacggcaacaccaattccaaggacacttcaa
ttttcattgatgggtgcacgtgatttgagtatcatcaatacaccgccacctaatcgtcag
ccagttctaacagaagtgatcaccttcaatgaagaagctatccgcgatgcaatttcgtat
gaggtaagtcgcggtggacaagtgtattttgtcaacaaccgtctagcaaacatcaaagag
attgctggaatgatttcacggttgtgtccaggagttcgtgtggcaattggtcacggacaa
atggacggaaagcagttagaaaaagtgatgatggatttcattcaaggggaatacgatgtt
ttgatagccactaccattattgaatcgggaattgatatttcgaatgcgaatacgattatc
atcaacgattcccacatgttcggtttaagcgatttacaccaattgcgcggtcgcgtgggt
cgctccaataaaaaaggattctgttacctcatttcacaacccatcagtttattgacttct
gaagcacgcaagcgcttggaagcattggttcagttctccgatttgggttctggattcaac
attgcgatgaaagatttagacattcgcggagcaggaaatttattgggtggtgagcaaagc
ggattcatctctgaaattgggtttgagatgtatcagaaaatcttgaacgaagcgatggat
gaattgaaagaagaagaattcaaagatttgtatgacgaccgaaataccgaatcaatgggt
gctcactacgtaaaagactgtgttttggaaacagatttcgagttacgcatcactgaagat
tacatcaacaatgtttcagagcgtttgagtatttaccaagatttagacaatttaaacacc
aaagaagaaatagaaggatacaaacaacagttgattgatcgttttggtccgttaccgcgt
gtggtgaaagaattgttgcgttcctttgaattgcgttggttggcacaggaaatcggcttc
gaaaaattggtcatcaaacaaggatcaatgattggttattttgtggcaagttctcaatcc
aagtactatgattcacccatgtttacacgggtattgaagtacgttcagacaaaccctaaa
gattgcaaaatgagcgagaagaacgatcgtttgcgcatgctctacagcaatgtaatgaat
atggatcaggcatttgagcgattgggggagatcataaattga
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