Fluviicola taffensis: Fluta_3581
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Entry
Fluta_3581 CDS
T01455
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fte
Fluviicola taffensis
Pathway
fte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fluta_3581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fte03019
]
Fluta_3581
03400 DNA repair and recombination proteins [BR:
fte03400
]
Fluta_3581
Enzymes [BR:
fte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fluta_3581
Messenger RNA biogenesis [BR:
fte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fluta_3581
DNA repair and recombination proteins [BR:
fte03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fluta_3581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_20
TFIIE_alpha
Motif
Other DBs
NCBI-ProteinID:
AEA45550
UniProt:
F2IDY6
LinkDB
All DBs
Position
4089942..4091834
Genome browser
AA seq
630 aa
AA seq
DB search
MSKKSQEILSKYWGYSEFRPMQEEIIEASIYGKDVIALLPTGGGKSICFQVPGIAREGIT
IVVSPLIALMEDQVNQLQKRGIRAKALTSGLSFREIDILLDNAKFGGIDFLYISPERIQT
RLFQERVKQMEIALFVVDEAHCISEWGHDFRPAYMEISKLREYHPEVPIIAVTATATPKV
KEDIASHLKLKNPEIFEASFERTNVSYEVYPVSNKLDAIAKWILKNPNDVGIIYCQTRKS
VKDVMIYLQALKIKANMYHGGMNGKERSLALTNWLSEHTPIMVATNAFGMGIDKPNVRFV
SHYEIPNNPESYFQEAGRAGRDGNESRTFAFVEPVDLNEIAVRVMAQFPSPDKIRLIYRA
LCNYLKVAIGSGEHESYILLFKDFVKKFNLNMAEVYPAFRLLEMNGSILFSEQGLKGSRI
KISIDNTHLYGFQLKNPVLDPLITWISRNHSEVFDSFCEIDEEEACKRLKISNQELERQL
KYLEEHGIIDITWRTDLPMITFLHERLPDDYIELKPEVYHFRKERALERMNVMKAYIEGR
HCRPQFIIAYFGQTSIPCGKCDYCLEQRLLEKHPRLELELIELLEQKPMTLAEIVSQFDA
SFATKIKSILKELINQERVTFSEMYFSLPQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaagagtcaagaaattctttctaaatattggggttattcggagtttcgtcct
atgcaggaagaaattatcgaagcttccatctatggaaaagatgtcattgctctcttacca
actggaggcggaaagtctatttgctttcaggttccaggaattgctcgtgaaggaattacc
attgttgtttcgcccctaattgcattgatggaggaccaagtgaatcaattgcaaaaaaga
ggaattcgagcaaaggcattaaccagcggactttcctttcgagaaattgacattttacta
gacaatgccaaatttggagggattgactttctatacatttctccagagcgcattcaaaca
cgcttatttcaggaacgcgttaaacaaatggaaatcgccttgtttgtagtcgatgaggca
cattgtatttctgagtggggacatgattttcgacctgcttacatggagatttcaaaactt
cgtgaatatcatccagaagtgccaattattgccgttactgcaactgctacacccaaggta
aaggaagatattgcgagtcatttgaaattgaagaatccagaaatttttgaggcttccttt
gaacgcaccaacgttagttatgaggtttatcctgtttccaacaagttagatgccattgca
aaatggattctcaaaaaccccaatgatgtagggattatctattgtcaaactcgcaaaagc
gtgaaagatgtgatgatttatttgcaagctctgaaaatcaaagcaaatatgtatcatggt
ggaatgaatggcaaagagcgaagtttggcattaacgaactggcttagcgaacacacgccc
atcatggttgcaacaaacgcattcggtatgggaattgacaaacctaatgtccgatttgtc
tctcactacgaaatacccaataatccggaatcgtattttcaagaagcaggtagagctggt
agagatggtaatgaatctcgtacgtttgcatttgtcgaacctgtagatttgaatgaaatt
gcagttcgagtgatggcacaattcccaagtcctgataaaatccgattgatttacagggct
ttgtgtaattatttgaaagttgctattggctctggtgaacacgaatcatacatcttgctc
ttcaaggatttcgtgaaaaagtttaatttgaacatggcagaagtttatccagctttcaga
ttactggaaatgaacggaagtattctcttttctgaacaaggattgaaaggttcacggatt
aaaatcagcattgacaatacacacttgtacggttttcaattgaagaacccagtactcgat
ccattgataacttggatttctagaaatcacagtgaagtgtttgattcattctgtgaaatt
gatgaagaggaagcttgcaaacgcctaaagatttcaaatcaagaattggaaaggcaattg
aaatatttggaagaacacggaatcatcgatattacttggcgaacagacttacctatgatt
acgtttctacacgaaagacttccagatgattacattgaattgaaaccagaagtctatcat
tttagaaaagaacgtgctttggaacgaatgaacgtgatgaaagcctacattgaaggaaga
cattgcagacctcaattcatcattgcatattttggacaaacaagtattccttgtggcaaa
tgtgactattgcttggaacagcgtttattggaaaaacacccccgattggaattggaactc
attgaacttttggagcaaaaaccaatgactttagcagaaatcgtgagtcaatttgacgca
tcctttgctaccaaaataaaatccattctgaaagagctgatcaatcaagaacgagtaact
ttcagtgagatgtatttctcgctcccccagtaa
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