Francisella tularensis subsp. holarctica OSU18: FTH_1682
Help
Entry
FTH_1682 CDS
T00399
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fth
Francisella tularensis subsp. holarctica OSU18
Pathway
fth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FTH_1682 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fth03021
]
FTH_1682 (rpoC)
03400 DNA repair and recombination proteins [BR:
fth03400
]
FTH_1682 (rpoC)
Enzymes [BR:
fth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FTH_1682 (rpoC)
Transcription machinery [BR:
fth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FTH_1682 (rpoC)
DNA repair and recombination proteins [BR:
fth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FTH_1682 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABI83458
UniProt:
Q0BKC6
LinkDB
All DBs
Position
complement(1672531..1676784)
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDEEYAEALENYGYEFEASMGA
EAIRDLLADTDIESEIELLQAECEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVELEEAVVWDILETVINEHPVL
LNRAPTLHRLGIQAFEPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSSYEDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPDNKEAKIEEAEKEIK
QITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVSINGEKKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERQVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKAVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKIVDEKG
AELKSIPLAVGAVLNVADDSILEVGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLAD
GPTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDS
KFVKDESIELVRILEENDKLRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVL
TEASINSQIDNLRGLKENVLIGRLIPAGTGLAVRKESAKIEKMREELGVEDNMVFTDLSS
FNPEEISFDSIQSQKEDKDINEDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctttagcatcgcctgaggttattcgttcgtggtctcatggtgaagttaaaaaaccagaa
actataaactatagaacatttaagcctgaaagagacggattattctgtgctaagatattt
ggtccaataaaagactatgaatgcttatgtggtaagtacaaaagacttaagcaccgtggc
gtagtctgtgagcgttgtggtgttgaggttgagcaagctaaagtaagaagagaaagaatg
gggcacattgatttagtatgtcctgtagtacatatttggtatctaaagtctttaccttct
agaattggtttatttttggatatgccattaaagaatgttgagaaggttttatactttgag
tcatacatagttactgacccaggtatgactccattagagaaaaaacaacttcttacagat
gaagagtatgctgaagcattagaaaattatggttatgagtttgaagcatctatgggtgct
gaagcaataagagatttattggcagacactgatattgagtcagagattgagttacttcaa
gctgaatgtgaagagagtaaatctacagctaagaaagaaaaagctattaagagattaaga
cttcttgaaactttccaagcttctggtaataaacctgaatggatggtaatgacagtacta
cctgtattaccaccggatttaagaccattggtaccaatcgaaggtggtagatttgcaact
tctgatcttaatgatttatatcgccgagtaattaacagaaacaatagacttaagaagcta
ttggacctaaatgctcctgatattattgtcagaaatgaaaagagaatgttacaagaagcg
gtagatgctttattagataatggtagacgtggtagagcagtaacgggctctaataaaaga
ccacttaaatcattagcagatatgattaagggtaaacaaggtcgtttccgtcaaaactta
ttaggtaagcgtgttgactattctggtcgttctgtaattacagttggtccatctttgaga
ttacatgagtgtggtttacctaagaagatggcactagagttatttaaaccatttgtatac
tctaagctaaggttaggtggtcatgcaacgactatcaaacaggctaagagaatggttgag
cttgaggaagctgtagtatgggatattcttgaaactgtgattaatgagcatccggtatta
ctaaaccgtgctcctacattacatagactaggtattcaagcgtttgagcctagacttatt
gaaggtaaggctatacagctacatccattagtttgtgctgcgtttaacgctgactttgat
ggtgaccaaatggctgtacacgtaccattaacagttgagtcgcaactagaagctagagta
ttgatgatgtcaacaaacaacatcttatcaccagcatctggtcaaccgattattactcct
actcaagatattgtattaggtctatactatatcactagagagaaagaaggtgcgcgtggc
gagggtaaattattctctagctatgaggatgttagtagagcttataactcagggactata
gatatccatgctaagattaaactaagaatagatagacaagtatttgatactaaaggtaat
acatacaatgagaaaggtgttgttaatactaccgttggtagagcacttttattgaatata
ctaccagaaggtctatctttctctctattaaataaagtactagttaagaaagaaatttct
aaaattattaatcaggcatttagagtcttaggtggtaaagctacggtagttttagcagat
aagttgatgtatgcaggatttaaatattcaacattgtcaggggtatctgttggtgttgat
gatatgactattcctgataacaaagaagctaaaattgaagaagcagaaaaagaaattaag
caaattaccgaacagtatcagtcttcattaattactgaaaatgagagatataacaatatt
atcaatatttggagtaagacttcagatgaggttggagcttcgatgatggatgctatatct
aaagatacagttagtattaacggtgagaaaaaagaaatcgagtcattcaactctgtatat
atgatggctaaatcaggtgcaaggggttcttataatcagatgagacagcttgcaggtatg
cgtggtctgatggctaagccagatggtacgatgattgaaactgcaattacagcaaacttt
agagaaggtctgtcagtattgcagtactttacatctacgcacggtgcacgtaaaggtcta
gctgatacggctcttaagacagctaacgcgggttatctgacgcgtagactagttgatgtg
gctcaagatttagttgttattgaagaagattgtggtactgatgatggtttgatgttctca
gctattgttgaagatggtgaagtcaaagttcctctagtagagcgtgctttaggaagaact
ttagcagcagatgtggttactgagaagggggttgtattgcttgaagcaggtactttatta
gatgagaatcttgttgagttacttgatgataacggtattgatatgatcaaagtcagatca
ccaataacttgtaaaacacgtagaggattatgtgctaagtgttatggtcgtgatctagcg
cgtgaaagacaagttaatgttggggaatctgtaggtgtgattgctgctcaatcaattggt
gagccaggtacgcagttgacaatgagaacattccacactggtggtgctgcgtctctgggt
attacagtttctgacattaaagttaaaactgctggtaagattaagtttaagaatattaga
actgtaactaacaaagaaggtcaagaaattgttatatctcgcgcaggtgagattatcgtt
tctgatactatgggtagagtgagagaacagcataagatccctatgggtgcagtcgttcct
ttagctagtggtaaagcagtagaaattggtgatgtgattgctacgtgggatccgcatgct
cagccattaattacagatgttgctggtaaagttgttcttgaagatgtgattgatggtata
acatctaagcatacttatgatgatttgactggtcagcaaactattgagataacttcaata
tctcaaagaacaacatctaaaaacttaaaaccagttgttaagattgttgatgaaaagggt
gctgagcttaagtcaatacctctagcagttggagcagtattaaacgttgccgatgattct
atactagaagttggtgatatcgtagctaagattcctctagaaggttctaagaacaaagat
attaccgggggtcttccacgtgttgctgagcttttcgaagctagacgtcctaaagatgcg
gcaatactttctccatgtgatggtatggttaggcttggtaacagagacactaaagaaaaa
cagcgtattgagattatagataaaaatggtcatattgttgaagagatattattacctaag
tctcgtcacctagtagtttttgatggtgagcaggtttctaggggtgatgttttagctgat
ggacctactgatccacatgatcttcttaagtacaaaggacttgaggaatttgctgattat
attcttatcgaagcgcagtctgtatatcgtatgcagggtgttgttattaatgataagcat
attgaaacaattgtaagacaaatgttaagaaaagctgtaattcttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgagttagtaagaatacttgaagaaaatgataaacta
cgtaagcaaggtaaaaaagaagtagagtatgagctggtattaatgggtattacacgttct
tctttatctacggagtcattcttatcggctgcttctttccaagaaacaacaagagtgctt
actgaggcttcgataaactcacaaattgataatttaagaggacttaaagaaaatgttctt
attggtagattaataccagcaggtactggtctagcagtaagaaaagagtcagctaaaatt
gaaaaaatgcgtgaagaattaggggttgaagataatatggtgtttactgatttatcgtct
tttaaccctgaagaaatctcttttgatagtattcaatctcaaaaagaagataaagatatt
aatgaagacatcgaggagtcattaagaaacgctcttgagtcacttgatttctaa
DBGET
integrated database retrieval system
