Fervidobacterium thailandense: U0O82_03180
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Entry
U0O82_03180 CDS
T11134
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fthl Fervidobacterium thailandense
Brite
KEGG Orthology (KO) [BR:
fthl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fthl03009
]
U0O82_03180 (rlmD)
Enzymes [BR:
fthl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
U0O82_03180 (rlmD)
Ribosome biogenesis [BR:
fthl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
U0O82_03180 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
RrnaAD
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
TRAM
Methyltr_RsmB-F
Methyltransf_15
PrmA
Methyltransf_11
TehB
SAM_MT
NodS
MethyltransfD12
Motif
Other DBs
NCBI-ProteinID:
XEY14734
LinkDB
All DBs
Position
complement(652809..654155)
Genome browser
AA seq
448 aa
AA seq
DB search
MYENGKEPQIVYVERYVHGGYGIGKLPGGKLVLVEGGYPSELVKVSITEERNDMAFGKVV
EILEPAKFRRTPRCKYFGTCGGCQLMDVEYETQLVLKREIVQDQLRRIAKLETEVNETIP
SDLEFGYRNKMEFSFGFRDGRVLLGLKRRNSIEIVDVDECPISPTSFNKALAVVPEIVET
TKVKIYNPVRRTGTLKHLVMRYSHSHNQTMAIFVTKTETFREARDIRALLLRKVPQINSI
IHVMNSSDTVVLRGPYKTLYGSGVLEVEMDYEKFQIPPTAFFQNNHHVTNKMIEHVVKSL
ELEGKETILDLYAGVGTFTMRLAMLSKFVTAVENAHIAVKAGRANANINNLRNVKFEEAD
VEEFLKSYDGSTDVVVLDPPRTGAGKAVCKRILELKPKKIAYISCDPATLARDLAILKEH
YKIKSVQPFDMFPQTYHVETVVVLERIM
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaaaatggtaaggagccgcagattgtttacgtggaaaggtacgtgcacggtgga
tacggcatcggaaaacttcccggtggaaagcttgtgctcgttgaaggcggttacccttcc
gagctggtcaaagtgtcaattaccgaagaacgcaacgacatggcttttggtaaggtggtc
gagattttagaaccggccaagttccgtaggaccccaagatgtaagtatttcggaacatgc
ggtggttgtcaactgatggatgttgaatacgagacccagctggtgctcaaaagagagatc
gtccaggaccagctgaggaggatagctaagctcgagactgaggtaaacgaaaccattccg
agcgaccttgaattcggttatcgaaacaagatggaattctcgttcgggttcagagatggt
agagtcttgctagggctgaagcgcaggaattcaatcgagattgtggatgtggacgaatgc
cccatatctcccaccagtttcaacaaggcacttgccgtggtcccggaaatagttgaaacc
acgaaggtgaaaatctacaatcccgttcgtcgaaccggcacactgaagcacctggtgatg
aggtattcccattcgcacaatcagacgatggccatttttgtgaccaagaccgaaaccttc
agagaagcacgggacatccgtgcacttcttctaagaaaggtgccgcaaattaattcgatc
atccacgtgatgaattcctcggacacggtggtactcaggggcccgtacaagacactttac
ggttctggtgtactcgaggttgagatggattacgaaaaattccagatcccaccgaccgcg
ttcttccagaacaaccaccatgtcacgaataagatgatagagcacgtggttaaaagtctg
gagctggagggtaaagagaccatccttgatctgtacgctggcgttggtacgttcacgatg
agacttgcgatgctctcgaagttcgttaccgcggtggaaaatgcgcacatagcggtcaag
gctggtagggcaaacgcgaatataaacaacctgaggaacgtgaagttcgaggaagctgac
gtggaggagttcctgaaatcctacgatggttccacggacgttgtggtcctcgatccacca
agaaccggtgccgggaaggccgtctgtaaaagaatattggagctaaagccaaagaagatt
gcgtacatctcttgtgatcccgcaacactcgcacgtgacctggctattctgaaggagcac
tacaaaatcaaatccgttcaaccgttcgatatgttcccacaaacttatcacgtggagacg
gtagtggttctagagaggataatgtga
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