Fervidobacterium thailandense: U0O82_04565
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Entry
U0O82_04565 CDS
T11134
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fthl Fervidobacterium thailandense
Pathway
fthl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fthl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0O82_04565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fthl03019
]
U0O82_04565
03009 Ribosome biogenesis [BR:
fthl03009
]
U0O82_04565
Enzymes [BR:
fthl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0O82_04565
Messenger RNA biogenesis [BR:
fthl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0O82_04565
Ribosome biogenesis [BR:
fthl03009
]
Prokaryotic type
rRNA helicases
U0O82_04565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
Cas3-like_C_2
NICE-3
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XEY15090
LinkDB
All DBs
Position
961659..963476
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AA seq
605 aa
AA seq
DB search
MSDDFWKVKEGAGKSDCRVIRTRQKMEKRKGRVRFVKESSAVVSFEGFGLSAEILEAIRK
KGYETPTEIQSLVIPHALEGSKDIIAQAKTGTGKTAAFGIPILEKLFTLREQSVRKIKVL
ILTPTRELALQIADELNALKGRKRLRITTIYGGQSYERQFNDLRKGVDIVVGTPGRILDH
IERGTLDLTGVEFLVLDEADRMLDMGFLDDVKRIIEKLPSERRTFLFSATMPPEIVQIAK
RFMKNYVHISTVTEELTTENATQVYFEVDKASKLPLLCRVIDSSPDFYGIVFCQTKAEVD
EVSAKLIELGYSAEGLHGDFSQYQRERVLERFKKKLVRILVTTDVAARGIDIDGLTHVVN
FSVPRDPEYYVHRVGRTGRAGKKGVAITFVSREEYQHFLRLKKFSKARIIKEEIPQIEEI
YRRHLEALINQLEHLPRVENGLLQSFAERLIERFGSVGAVEMLLNELMRNKVDKNRYGEI
GRFDFSEQGDERVRLFVALGSADGLDAKKLIAFIEEKTGVEASSVTNVRVFERYSFIDVP
RLEGELIIKELNRSNGRRGKKLVDFAKAPKAPAERSNENTKQSRNLSREKSKEKSREKTR
GEHVR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgatgatttttggaaagtgaaggaaggggctggtaaatccgactgccgggttatc
agaactcggcaaaaaatggaaaagcggaaaggaagggtgaggtttgtgaaggaaagttca
gcagttgttagttttgaaggttttgggttgagtgcggagatactcgaggcgataaggaaa
aagggatatgaaacacccactgagattcaaagtttagttattccgcacgcgcttgagggt
agcaaggatatcatagctcaagcgaagacgggtacgggaaagaccgctgcgttcggtatt
ccgatcctggagaaactttttacgttgagggagcagtcggttagaaaaatcaaggtgttg
atactcacacccacaagggaactggcgttgcagattgccgacgagctcaacgcgttaaag
ggcaggaaacgtctgaggattacaacgatttacggaggccaatcgtacgagaggcaattt
aatgatttgagaaaaggtgtcgatattgttgttgggacaccgggacgtatactggaccac
atcgagcgaggaacgcttgacctgacgggtgtggaatttctcgttctcgatgaggcggac
aggatgctcgatatgggctttttggacgatgtgaaacggataatagaaaaacttccatcc
gagcgtaggacgtttctattttcggcgacgatgccaccggagatcgttcaaattgcgaag
cgattcatgaaaaattacgttcacatctccaccgtaaccgaggaactcaccacggaaaac
gcaacgcaggtgtacttcgaggttgataaggcgagtaagttgccgcttttgtgcagggtc
atagactcatccccggatttttacggaatagtattttgccagacaaaggccgaggttgac
gaggtttcggctaagttaatcgagctcggctacagtgccgaaggactgcacggggatttt
tctcagtaccaacgtgaacgcgtacttgagcgatttaagaaaaagttggttcggatactc
gtaactaccgacgttgcggcgcgtggtatcgatatcgatggactaacgcatgtggtgaac
ttctccgttccgcgggacccggagtactacgtacatcgcgttggacgtactgggcgggcg
gggaagaagggagtcgccatcacgttcgtttcacgggaggagtaccagcatttcctcagg
ttgaaaaaattctcaaaagcgcggataattaaagaggagattccgcagatagaggagatt
taccgcaggcatttggaagctcttataaaccagcttgagcaccttccacgtgttgagaat
ggcttacttcagtcgttcgctgagcgattgatagaaaggtttggaagcgttggggccgtg
gagatgctactcaacgagctgatgcgtaataaggtagataaaaacaggtacggtgagata
ggcaggttcgatttttccgagcaaggggatgaacgggtgaggctcttcgtggccctgggt
agtgccgatggtttggatgcaaagaagttgatagctttcatcgaggagaaaacgggtgtg
gaagcttcgagcgtgacgaatgtgcgtgtttttgaaaggtattcattcatcgacgtacca
aggctcgaaggtgaattgataatcaaggaattgaacagatccaatggtaggcgaggaaaa
aaactcgttgattttgcaaaggctccgaaagctccggcggaacgttctaatgagaacaca
aaacaaagtaggaatctctccagggaaaaatcaaaggaaaaatcaagggaaaagaccagg
ggggaacacgtaaggtaa
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