Fervidobacterium thailandense: U0O82_09790
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Entry
U0O82_09790 CDS
T11134
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fthl Fervidobacterium thailandense
Pathway
fthl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fthl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U0O82_09790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fthl03021
]
U0O82_09790
03400 DNA repair and recombination proteins [BR:
fthl03400
]
U0O82_09790
Enzymes [BR:
fthl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0O82_09790
Transcription machinery [BR:
fthl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0O82_09790
DNA repair and recombination proteins [BR:
fthl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0O82_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
NQRA_N
RnfC_N
Topo-V_HhH_2_2nd
Biotin_lipoyl_2
CHASE9
Motif
Other DBs
NCBI-ProteinID:
XEY15150
LinkDB
All DBs
Position
complement(2057568..2062538)
Genome browser
AA seq
1656 aa
AA seq
DB search
MMSSSFKRKIAAVKIGIASPEVIRSWSSGEVKKAETINYRTFKPEKDGLFCERIFGPVKD
YECACGKYSGKKYEGTVCEKCGVRVESKEARRRRFGHIELAAPVTHVWFLKNTPSVIATL
LDMSVKDIENIVYFGSRRVNERVFIVTDPKNTPFIKGSILNQTEYEIYAKKWDFDVSPAY
IVKEPRVPLVSEIDGEVHIKHEKTHTDRDLYWIVVKNAVKVELRVLTGMELKVKDGAQVS
QGEEIVPERHVEAIYAPFDGTVEVDEFSETITIKPLPTSKNTPITFSLPYGVRVLVKNGE
KVKKGHQLTTETVLPSVVAPVSGTLRYSKQLNLRPLENGNYEVLANGVIYIENVQQVKQY
PVFEGAYIYVQDGDTVKAGDVLADRFLFEEEKLTVEEYKLFNQYYHGKFVVEEQVENDKP
IVVVTNIDPEVAAETGLTKGQIITQQDFEAYSRIYPGKIEAETGALAIKKLLQSLDLEVM
KAELEAELQKIPKSSVRAKKLLKKLSLVKSLLNSGTKPEWMVLEVLPVVPPEIRPMIQID
GGRFATTDLNDLYRRVIMRNNRLKKLLEMNAPDVIVRNEKRMLQEAVDNLIYNGKIGKAY
VDRNGRPLKSLTDLIRGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMALEL
FEPFVIAELSKEENVEVTQAKAKKYKKELQREDPRAWEKLEKVIQGRVVLLNRAPTLHRM
SIQAFEPKLIEGNAIQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLSRYNIIS
PAHGKPISMPGKDIVAGIYYLTMVGKDYDQIQPEQIKWKFASPEEAEIAYEFGFIKLHEP
ILININGKVIKSTFGRVIFNSILPEDLRDYNKTFGKNGIKDVVYKTFKQYGIDRTADLLD
DIKDLGFHYATVSGLTISLKDLKISPRKKEIVEAALKKVEQIERLYEEGFLSDEEKYKET
IKIWNDATSEIQEETYRHLGEDPFNPVFIMVDSGARGNKDQLKQLSGMRGLMADPSGRTI
EIPIISNFREGLSMLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVVQSVVITEPDCG
THEGVRARILKSSDNFVVEKIEDFIFSRVLARDVYEPGTGNVLMNPETGKLYTRDTLIND
DDARFLSNYRKRVKVVEEMEFDVTSGNIPEFYAEIVERIDLGDEVIHPETELDWGIVKKL
RDAGIRSVRVKVYPVVGNVVAEDVVWDKNKQKQIAVEEEQIDPVVAKLLEENGVESIVVR
PEIYVRTPLTCESETGVCAKCYGLDLSNHKIVNVGEAVGIIAAQSIGEPGTQLTMRTFHT
GGIATTADITQGLPRVEELFEARKKTKDPEGVFSKVKGTVVDISQDEPKKIYVQDELGAI
HEYEVPPRVRVNVVIGQKVLPGQSLTSGSLKVRKILEDLGTEETAIYLLKEIKKVYVQQG
VDIHDKHFELIIRQMLNKGEVIDAGDTDFLPGELVPISLLNKVNKEIMEGNARIEINRKR
VLGKALARHIIVKDENGEILELAKEGEEVTEELIEKLIKYGIKEVVVLTSDKELETYQIA
PKETVKYRRRLLRITQASLEYEGWLSAASFQQTQQVLTDAAVRGAIDYLKGLKENVIVGQ
LIPAGTGFQIFANVQYEETPRAAQEEKFGTTDSSRA
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
ctgatgagttcttctttcaaaaggaagatagcggcggtgaaaatcggtatagcttctccc
gaagtgatcagatcctggtcaagcggggaagtgaagaaggccgagacgataaattaccgt
accttcaagcctgaaaaggatgggctcttttgcgagcgcatctttggtcccgtaaaggat
tacgaatgtgcctgtggtaagtacagtggtaagaagtacgaaggtacggtttgtgaaaag
tgtggtgtacgtgttgaatcgaaggaagccagaaggcgcaggttcggtcacatagaactc
gcagcaccggttacgcacgtttggttcctcaagaacaccccaagtgtaatcgctacgtta
cttgatatgagcgttaaagacatagaaaacatcgtctatttcggcagtcgcagggtgaac
gagcgagttttcatcgtcacggatccgaaaaatacaccatttatcaaggggtccatactg
aaccaaacggaatacgaaatctacgcaaaaaagtgggactttgacgtttcaccggcatat
atagtcaaggagccgagggtacctctcgtttcagaaattgacggtgaggtacacataaaa
cacgaaaagacgcataccgaccgagacttgtattggatcgttgtaaaaaacgctgtcaaa
gttgaattgagagttctgacgggtatggagctcaaggtgaaagacggggcacaagtcagt
caaggtgaggagatcgttcccgaaagacacgtggaggcgatctacgcaccgttcgatgga
actgtagaggttgatgaattctccgaaacgatcacgatcaaaccgttgccgacgagcaaa
aatactcccataaccttctcattaccttacggtgtcagggtgttggtaaaaaacggtgag
aaggtcaagaaaggtcaccagctgacgacggaaacggtgttaccgagtgttgtggctccg
gtgtctggaacactgaggtacagcaaacaactcaacctaagaccacttgagaatggtaat
tacgaagttcttgcgaacggagtaatctacattgaaaacgtccaacaagttaagcagtac
cctgttttcgaaggtgcgtacatatacgttcaggatggagacactgttaaggccggcgat
gtgcttgccgataggttcctctttgaggaggaaaagttgacggtcgaagagtacaagctc
ttcaaccagtactaccacggaaaattcgtcgtggaagaacaagtcgagaacgacaagccc
atcgtcgttgtaacaaacatcgatccggaagtagccgcggaaacaggtttgacaaaaggg
caaataatcacccaacaggattttgaggcttacagtagaatctatcctggtaagatcgag
gctgaaaccggtgcgttggcgatcaaaaagcttttgcaaagcctagaccttgaagttatg
aaggctgaactcgaagctgagttacagaagattccaaagagcagtgttagggcgaaaaag
ttactcaaaaaactcagcttggtcaagtcacttctgaacagcggtacgaaacccgaatgg
atggttcttgaagtactaccggtcgtaccaccggaaattaggccaatgatacaaatcgac
ggtggtaggtttgcaacgacagatttgaacgatctctacagaagggtcataatgagaaac
aacaggctcaagaagctcttggagatgaacgcgccggacgttattgttagaaacgaaaaa
aggatgctccaggaagctgttgataacctcatatacaacggtaagataggtaaagcgtac
gttgacagaaacggcaggcctttgaagtctctcacggacctaatcaggggaaagaaaggg
cgcttcagaaggaacctccttggaaaacgtgtggactactctggtagggccgttatcgtc
gtcggtccgcacctgaaaatccacgagtgtggattacccaagaagatggcactcgagctc
ttcgaaccgttcgtcatagccgagctctcgaaagaggagaatgtggaagttacgcaagcg
aaggccaaaaagtacaagaaagagctccagcgtgaagatccgagagcttgggaaaaactc
gagaaggttattcaaggtagggtcgttttgctgaaccgtgcaccgacgctccacagaatg
tcgattcaggcgttcgaaccaaagctcatagagggtaacgcgatccagttacatccgttg
gtctgtccaccgttcaacgcggacttcgacggtgaccagatggcggtgcacctaccgctg
tccccggcggcgcaggctgaagcaagactcttaatgctatcccgttacaacatcatctca
ccggcgcacggaaaaccgatctccatgccgggaaaggatatcgttgccggtatatactac
ctgacgatggttggaaaggattacgatcaaatccaacccgagcaaatcaaatggaagttc
gcttcgccggaagaagcggagatcgcttacgaatttggtttcatcaaacttcatgaacca
atattgataaacataaacggaaaagtaattaagagcaccttcgggcgcgtcatattcaac
tcgatattgcccgaggatctcagggattacaataagaccttcggtaagaacggtatcaag
gatgtcgtttacaagaccttcaaacagtacggaatcgacagaacggcggacttgctcgat
gacattaaggacctcggattccattacgctacggtctccggattaaccatcagtttgaaa
gacttgaagatatcaccgaggaagaaggaaatcgttgaagcggcattgaagaaggttgaa
cagatcgaaaggctctacgaagaaggattccttagcgacgaggaaaagtacaaagagacg
atcaagatctggaacgatgcaacctccgagatccaggaggaaacctaccgtcacctcgga
gaggatccgttcaacccggtcttcataatggtcgattccggagcgaggggtaacaaggac
cagctcaagcaactatctggtatgcgcggcttaatggctgatccttccggaagaacgatc
gagataccgattatctccaacttccgcgaaggactttcgatgctcgagttcttcatcagt
acgcacggtgcaagaaaaggttccgcggacacggcactcagaacgagctccgctggatac
ctcacaagacgtcttgttgacgttgtccagagtgtcgtgattaccgaaccggattgtggt
acgcacgagggtgtcagggcacggatcctgaagagttcggataatttcgttgttgaaaag
atagaggacttcatcttcagtagggtccttgcgcgcgatgtttacgaacctggtacgggt
aacgtactgatgaacccggaaaccggaaagctctacacacgtgacacgctcatcaacgac
gacgatgcgaggttcctctcgaactacaggaagagggttaaggttgttgaagaaatggaa
tttgatgtaacaagcggaaacattcctgaattctacgctgaaatagtggagaggatagat
ctcggagacgaagtgatccatccggaaacagaactcgactggggaattgttaaaaagctg
agagatgccggaattcggagtgtgcgtgtgaaagtttatcctgttgtaggtaacgttgtt
gcagaagacgtagtttgggataagaacaagcaaaagcagatcgcggtggaagaggaacaa
atcgatccagttgttgccaagctccttgaagagaacggtgttgagagtatcgttgtgaga
cctgaaatttacgttagaacaccgctcacgtgtgaatcggaaacgggtgtctgtgcaaaa
tgttacggactcgacttgtcgaaccacaagatagtcaacgttggtgaggccgttggaatc
attgcggcacagtccatcggtgagcccggtacccagctgacgatgagaacgttccacacc
ggtggaatcgcaacgacagcggacattacacaaggtttgccgagggttgaagaactcttc
gaagcaaggaagaagacgaaagatcccgaaggagtgttctcaaaggtcaaaggaacagtt
gttgacatctcccaggacgaaccgaagaagatttacgtccaggatgaactcggtgcgatc
cacgagtacgaggtgccaccgagagtcagggttaacgtggtcataggtcagaaggtgctc
ccgggtcagtctcttacaagcggttcgttgaaggtgcgcaagattctcgaagacctcggt
acggaggaaacggcgatatacttgctcaaggaaataaagaaggtttacgtccagcaaggt
gtggacatccacgataaacactttgagttgatcatcagacagatgctcaacaaaggtgaa
gtgatcgacgctggcgatactgacttcttgcccggcgagctcgtgccaatcagtctcttg
aacaaggtcaacaaggaaatcatggaagggaatgcaaggatcgaaatcaacagaaaacgt
gttcttggtaaagcactcgcaagacacatcattgtcaaagacgaaaacggcgaaatcttg
gaacttgccaaagaaggcgaggaggtcaccgaagaactcatagaaaagttaatcaaatac
ggaatcaaagaagttgtcgtactaacttcagacaaagagttggagacgtaccagattgca
ccgaaagaaacggtcaagtacagaaggaggttactcagaattacccaagcctcgcttgaa
tacgaaggatggctcagtgctgcaagcttccagcaaacgcaacaggtgctcacagatgcg
gcggtcaggggtgccattgattatctcaaaggtctgaaagaaaatgttatcgttggtcag
ctcataccggctggtacaggtttccaaatcttcgcgaacgtgcagtacgaagaaactccg
agggcagcgcaagaagagaagttcggaacaacagacagctcacgagcctaa
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integrated database retrieval system
