Francisella tularensis subsp. holarctica FSC200: FTS_0557
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Entry
FTS_0557 CDS
T02350
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fti
Francisella tularensis subsp. holarctica FSC200
Pathway
fti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTS_0557 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fti03019
]
FTS_0557 (rnr)
03016 Transfer RNA biogenesis [BR:
fti03016
]
FTS_0557 (rnr)
Enzymes [BR:
fti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FTS_0557 (rnr)
Messenger RNA biogenesis [BR:
fti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FTS_0557 (rnr)
Transfer RNA biogenesis [BR:
fti03016
]
Prokaryotic type
tRNA degradation factors
FTS_0557 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Ras
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AFT92469
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Position
539407..541659
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AA seq
750 aa
AA seq
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MSKYSIHNDPNKDIEAQKYENPIPSREVILNYIRDVKLPVSIENIANALEIFKKNLFEGL
VNRLGAMVRDGQLEKDRSYYNLPEMAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQA
KMVMVGDEVTAKVLGLNKRGRIDAEIKTIVTRAQKTVTGYYYKSFDCDFIKPISKSIISD
IVLLPPKQKIEHNSLIEAEIIVYPSISSAAVAKFKQEVEAVSPVKEAMMMTTQKYDLIEQ
WSKKALRYLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVVI
ADVSNYVEKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNI
SKEGKLSRYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLH
QARQERGAIDFDTVETQIILDEHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIR
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGAADY
KPSELANICENASDQERNADAASKQVENWLKCYFMQDYIGHILEAQIKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLERIHIDFEL
YDPRKPFAENSSDKPFAKKQKNLKKLKRRK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagtacagcatacataatgatccgaataaggatattgaagcgcaaaaatatgaa
aatccaattccaagtagggaagtgattttaaattatataagagatgtaaaacttcctgta
agcattgaaaatatagcaaatgctttagagatttttaaaaaaaatcttttcgaaggtctt
gtaaatcgtttgggtgcaatggttagagatggtcagctagagaaggatagatcatattat
aatttgccggaaatggcgccaatatatatcacatctaaagttactgcagatagagattct
cgtttagagctatttagccatactctaaatacaaaggtaggtatagtatctcatcaagca
aaaatggtaatggttggtgatgaggtaactgcaaaagttcttgggcttaataagcgtggt
cgaatagatgctgaaattaaaaccatagtgacaagagctcagaagacagtcacgggctat
tattataagagctttgattgtgattttattaagccgataagcaaaagcataataagtgac
atagtgctattaccaccaaagcaaaaaatagagcataactctttaatagaagctgagatt
attgtttatcctagtataagtagtgcagctgttgctaaatttaagcaagaggtcgaagca
gtatctccagttaaagaagcgatgatgatgacaacacagaagtatgatttaattgagcag
tggagtaaaaaggctttacgctatttagataatatttctgatgacgtggttgttggcaac
agggttgatctacgtaatcaacactttgtaacaattgatggtgaagatgctaaggatttt
gatgatgcagtttatgcacataagactaaaagtggtagttggaagttatatgtagtaatt
gcagatgtctcaaactatgttgagaaagattcagctttggatttagacgctaagcgtcgt
tctacttcagtgtatttccctggttatgtgataccaatgctaccagagaaattatcaaat
ggtttatgttcattaagaccaaacgaagatagatattccttagtctgtgagatgaatatt
agtaaagaaggtaaactttctaggtataagttttattctgctgtaataaactcaaaggca
cgcttaacttatacagaagttgctaaacttttagaaaagaaacaaaacactatagttgag
aatactcctgagctagtacctaatatatttgatttatacgagttgtataaagtacttcac
caagctaggcaagaacgaggtgctatagactttgatacagttgaaacacagataattctt
gatgagcataatcatattgaatcaattgtgccaagacatcgtaatgatgcacataggctt
attgaagagtgtatgcttgttgctaacgttgcagcagctaagtttactattaagcataaa
aagacatcaccatttagagttcatagtgagcctaaagaagatagaatggaaactcttaag
aagtatcttgctaagcatggtatacatcttgctcatggtaagaatggtaaagtgactccc
aaagctttagcacaaatgctagatagtataaaagatcgtcctgattatgatgatattcgg
atgatgactttacgtagtatgaatcaggccgtatatagcataaataatgatggacacttt
ggactagcatatagtgaatatacgcattttacctcaccaattcgtagatatccagattta
gtagtacacagaataataaaatcaattattggtgaatatgaacatggtgctgctgattat
aaaccttctgaattggcaaatatttgtgaaaatgcctctgatcaagagcgaaatgctgat
gcagcctctaagcaagttgagaattggttgaagtgctactttatgcaagactacattggt
catatacttgaagctcaaattaagcatgttaatggtttaggtctttttgctgaactaaaa
gatatgtacatagaaggtctgatacatgtatcagctattcctggtgattactatatttat
gatgaagccaaagatatattaattggtaaacgaacccataaagtctataaaattggtcaa
gatattacagtaagagttgttcgagcagatctcgaaagaattcatatagattttgagctg
tatgatccacgtaagccatttgctgagaatagctcagataagccatttgcaaaaaaacaa
aaaaacttaaaaaagctaaaaagaagaaagtaa
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