Frigoriglobus tundricola: FTUN_0833
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Entry
FTUN_0833 CDS
T06871
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ftj
Frigoriglobus tundricola
Pathway
ftj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTUN_0833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftj03019
]
FTUN_0833
03009 Ribosome biogenesis [BR:
ftj03009
]
FTUN_0833
Enzymes [BR:
ftj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FTUN_0833
Messenger RNA biogenesis [BR:
ftj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FTUN_0833
Ribosome biogenesis [BR:
ftj03009
]
Prokaryotic type
rRNA helicases
FTUN_0833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJW93327
UniProt:
A0A6M5YH15
LinkDB
All DBs
Position
890289..891833
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AA seq
514 aa
AA seq
DB search
MEPVLTPPTNGDDWTVPETGSKHVPSDEPVDELPPDSEAAADGEETDDPESEPGDPADDP
DHESAPPPEVDPAMTFADLKLIRPLMDAITHAGYTHPTPIQEAVIPPALRGKDVIGQAQT
GTGKTAAFLIPFLNRWRPHTLKGPIGLVMTPTRELALQIATEADRLAPSTRFRTVPVYGG
TGMQRQLTGLARGCDLVAGTPGRVLDHLQRGSLSLSQVRYAVLDEADRMLDIGFRDDIER
ILKRCPTERQTLLMSATVPDAIKRLVNRYMRDPVHLNMTPDTPTVDKIRQSYFTVDADRK
FELLKRVVEREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQTQREKIMAAFR
TGDIKYLIATDVMSRGIDVSDLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPE
QGELLTNIEMMINRLIEADRIEGFEAAAPRANRPPAEVKVVFSGLDSVKPPPKPDGEDDG
WGDDAPPAAPAAGDGDQPKKPVFGRRNKRYSQRL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgtgttgacccccccaacaaacggggacgactggactgttcccgaaaccgga
tcgaaacacgtcccgtccgacgagccggttgacgaactgccccccgattcggaagccgca
gccgacggcgaagagaccgacgaccccgaatcggaacccggcgacccggcggacgacccc
gaccacgaatcggccccgccaccggaagtcgatccggccatgacgtttgcggatctgaag
ctcattcggccgctgatggacgcgatcacccacgccgggtacacgcaccccacgccgatc
caggaagccgtcatcccgccggccctccgcggcaaggacgtgatcggccaggcccagacc
ggcaccgggaagacggccgcgttcctcatccccttcctcaaccgctggcgcccgcacacc
ctcaaggggccgatcggcctcgtgatgacccccacccgcgaactcgcgctccagatcgcc
accgaggccgaccggctcgcgccgagcacgaggttccggaccgtgcccgtgtacggcggc
accgggatgcagcgccagctcaccgggctggcccgcggctgcgacctcgtggccgggacg
cccggccgggtcctcgaccacctccagcgcggctcgctgtcgctgtcccaggtccgctac
gcggtgctagacgaggccgaccggatgctggacatcggcttccgcgacgacatcgagcgc
atcctgaagcggtgcccgaccgagcgccagacgctgctcatgtcggccaccgtcccggac
gcgatcaagcgcctcgtgaaccggtacatgcgcgacccggtccacctgaacatgacgccg
gacacgcccacggtagacaagatccggcagagctacttcaccgtggacgcggaccgtaag
ttcgagctgctcaagcgcgtcgtcgagcgcgagaagccccgccagtgcctgatcttcgtc
gaacggaagcgctgggccgacaacctgtaccgcgacctcaagcgggcggtcccgaaggcc
gcggtgatccacggcgacctgccgcagacgcagcgcgaaaagatcatggccgcgttccgc
accggcgacatcaagtacctcatcgcgaccgacgtgatgagccgcggcatcgacgtgtcc
gacctgtcgcacgtcatcaactacgacctcccgatggacatcgagaactacgtccaccgg
atcggccgcaccgggcgcatcggcaaggacgggatcgccatctcgttcgtgctgccggag
cagggcgagctgctgaccaacatcgagatgatgatcaaccgcctgatcgaggccgaccgg
atcgaggggttcgaggcggccgccccgcgggcgaaccgcccgccggcggaggtgaaggtg
gtcttctccggcctggactccgtcaagccccccccgaaacccgacggcgaggacgacggc
tggggcgacgacgcgcccccggccgcaccggccgccggggacggcgatcaaccgaagaaa
cccgtattcggccgccgcaacaagcgttacagccagcggctgtaa
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