Frigoriglobus tundricola: FTUN_1216
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Entry
FTUN_1216 CDS
T06871
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ftj
Frigoriglobus tundricola
Pathway
ftj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTUN_1216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftj03019
]
FTUN_1216
03009 Ribosome biogenesis [BR:
ftj03009
]
FTUN_1216
Enzymes [BR:
ftj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FTUN_1216
Messenger RNA biogenesis [BR:
ftj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FTUN_1216
Ribosome biogenesis [BR:
ftj03009
]
Prokaryotic type
rRNA processing factors
FTUN_1216
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
QJW93706
UniProt:
A0A6M5YK97
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All DBs
Position
complement(1366299..1368626)
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AA seq
775 aa
AA seq
DB search
MRSRSPRRPSRSPASPNPKRRSPRARKAVAPPVEDDDFGAGIVDAAAPAPVPEIAPPAEV
PVAEPVEPEVAEAIEALEGGDPVAPVEPVESDPEAKAKKPRTRRAKPKAEEPPADAEAPA
EADPKTKPRSRRKKSDDEGADDKPKYMGGAERRTSADDDEGEIRPFFDDGSADFDPDAPN
DRFGDAPPAPGDEPGADEEPLERFAGDPEPAEAAEAEAREIAHDAEEPNEVTGRGFNDDF
ESGPPRRDSDRDRGRGGRGDRDRGRGGPPRGGDRGGRSDRGRSSDRDRGPRAPGGFKSAG
GPKGGRDRGLPKPPIQDVFKRGQEVIVQVIKEAVGTKGPTLSTYVSIAGRYLVLMPSLNR
VGVSRKIEDHDARRRLREIMTTLAPPKGVGFIVRTAAVDRDAKELQNDLAYLLRLWQVVV
KRLKRVAGPVEIYRESDMITRTIRDIFTADIDTIWVDEPTAFGHASEFLQIVMPKFASRI
KFFEHTEPLFHKYGIEDEIAKIHQKRIEMPLGGSLVIEQTEALVAIDVNSGNFRADNNAE
ETAFQMNLHAAKEIARQLRLRDLGGVIVNDFIDMRSESHRRKVEDAFRDALQRDRARTKI
LRISQFGLIEMTRQRIRPSLKRSVFLDCPHCRGNGFVKTSESLAIEVMRLLQLAAHRAPA
VQLVQVTVHPDAANYLLNKRRKDIAALEERGKLEVQITGQAGLSPDVLNVRCFDHNGNEV
RLLPPAPLPKLTAGRVPRDDRGGRGPGGPPPRGRDDRGGRGDRDRDSRGYPRPLD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcgaggtcgccccgccgccccagccggtcgcccgcgagcccaaacccgaagcgc
cgaagcccgcgcgcgcgcaaggcggtcgccccgccggtcgaggacgacgacttcggcgcg
ggcatcgtggacgcggcggccccggcgcccgtcccggaaatcgcaccgcccgccgaggtg
ccggtcgccgagccggtcgaaccggaagtggccgaggccatcgaagccctggagggcggc
gacccggtggcgccggtggagcccgtcgagagcgaccccgaggccaaggccaagaagccg
cggacccgccgggcgaagccgaaggccgaagagccccccgccgacgccgaggctccggcc
gaggccgacccgaagaccaagccccgctcccgccgcaagaagagcgacgacgagggcgcg
gacgacaagccgaagtacatgggcggggccgagcgccgcacgtccgcggacgacgacgag
ggcgagatccggccgttcttcgacgacggctcggccgacttcgacccggacgcgcccaac
gaccggttcggcgacgccccgcccgcgcccggcgacgagcccggggccgacgaggagccg
ctcgagcgcttcgccggcgaccccgaaccggccgaggcggccgaggcggaggcccgcgag
atcgcccacgacgcggaggagccgaacgaggtgaccggccgcgggttcaacgacgacttc
gagtccggcccgccgcgccgggacagcgaccgggaccgcggccggggcgggcggggcgac
cgggaccgcggccggggcggcccgccgcggggcggcgaccggggcggccggagcgaccgc
ggccggagcagcgaccgggaccgcgggccgcgcgcgcccggcgggttcaagagcgccggc
gggccgaagggcgggcgcgaccgcgggctgcccaagcccccgatccaggacgtgttcaag
cgcggccaggaggtcatcgttcaggtcatcaaggaggccgtgggcacgaaggggccgacg
ctcagcacgtacgtcagcatcgccggccgctacctcgtcctcatgccgagcctgaaccgc
gtgggcgtgtcgcgcaagatcgaggaccacgacgcccgccgccggctccgcgagatcatg
accaccctggccccgcccaagggcgtcggcttcatcgtccgcaccgcggccgtggaccgc
gacgccaaggagctccagaacgacctcgcgtacctgctgcgcctgtggcaggtggtggtg
aagcggctcaagcgcgtcgccggcccggtggagatctaccgcgagtcggacatgatcacc
cggaccatccgcgacatcttcaccgcggacatcgacaccatctgggtggacgagcccacg
gcgttcgggcacgccagcgagttcctccagatcgtgatgcccaagttcgccagccgcatc
aagttcttcgagcacaccgagccgctgttccacaagtacggcatcgaggacgagatcgcc
aagatccaccagaagcggatcgagatgccgctgggcggctcgctggtgatcgagcagacc
gaggcgctggtcgccatcgacgtgaacagcggcaacttccgcgcggacaacaacgcggag
gagacggcgttccagatgaacctgcacgccgcgaaggagatcgcccggcagctgcggctc
cgcgacctgggcggggtgatcgtcaacgacttcatcgacatgcggagcgagtcgcaccgc
cgcaaggtggaggacgcgttccgcgacgcgctccagcgggaccgggcgcggaccaagatc
ctccgcatctcgcagttcgggctcatcgagatgacgcggcagcgcatccggccgagcctg
aagcggagcgtgttcctggactgcccgcactgccgcggcaacgggttcgtgaagacgagc
gagagcctcgccatcgaggtgatgcggctgctgcaactggccgcgcaccgcgccccggcg
gtgcaactggtccaggtgaccgtccacccggacgccgcgaactacctgctgaacaagcgg
cggaaggacatcgccgcgctggaggagcggggcaagctggaggtgcagatcaccggccag
gccgggctctcgccggacgtgctgaacgtgcggtgcttcgaccacaacgggaacgaggtc
cggctgctgccgccggccccgctgccgaagctgacggccgggcgcgtgccgcgggacgac
cgcggcggccgcgggccgggcggcccgccgccccgcggccgggacgaccgcggcggccgc
ggggaccgggaccgtgacagccgcggctacccgcggccactggattaa
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