Faecalibacterium taiwanense: PXT33_007845
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Entry
PXT33_007845 CDS
T10210
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ftk Faecalibacterium taiwanense
Pathway
ftk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXT33_007845 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftk03019
]
PXT33_007845 (rnr)
03016 Transfer RNA biogenesis [BR:
ftk03016
]
PXT33_007845 (rnr)
Enzymes [BR:
ftk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PXT33_007845 (rnr)
Messenger RNA biogenesis [BR:
ftk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PXT33_007845 (rnr)
Transfer RNA biogenesis [BR:
ftk03016
]
Prokaryotic type
tRNA degradation factors
PXT33_007845 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_HELZ2
DsrD
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
XBA09100
LinkDB
All DBs
Position
1567372..1569492
Genome browser
AA seq
706 aa
AA seq
DB search
MAMRDKIEHAIQNQPCTVKDLKSKFGGDRGSDRKVMEAVDQLVHEAVICQRQGVFFTVRS
GRADKALLCKVVKLGKNFAFVMLEDGTSDIFIPGRFTRGAMPGDMVLVEKFEHPRVEGSD
EGEILAILEEKNDLVGTARRIDGRLKFVPDDCPAISMQMMRDCEGGAKDGDKVAVEILQR
GNRQEDHRVGVAMRFGSSDEAKRCAKALLYAQDIHSRFPDKVREEAKKLENAEVSEKDTE
GRMDLRALPIFTIDSAETKDIDDAISLTKTPEGGFELGVHIADVSNYVKPGSELDNEAFN
RATSVYYADQVVPMLPKQLSNGICSLNEGVLRLAFSCLMHLDKDGNLIDYRFVKSVIRSR
VKGVYSEINALLAGSADDELKGKYHEVLSQLPAMKELYGHRARLRKERGCMDIESGEVKL
ILDEDGHCIDVKKRTSGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNAEKLER
LHTLLQACGINDHFAKDVPTPKELSAILEGVRGGPYEQIINTGMLRCMSKAVYEEKPKGH
YGLVLKDYAHFTSPIRRYPDLAIHRIMTAQLKGMDKDTMVLRYSDFAEKASKQSSEREII
AMQIERKAEDCYKAEYARRHLGECYEGRISGVTQRGLFIELDNGVEGFVPASSLTPSGTM
LTEGIRLSDPVSGKNWSLGDTMMITIVRADVNLGKIDFEVAPASTK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgcgcgataaaattgagcacgcgatccagaatcagccgtgcaccgtcaaagac
ctcaaatccaaattcggcggggaccgcggctcggaccgcaaggtgatggaggctgtggat
cagctggtgcacgaggcggtcatctgccagcgtcagggcgtgttctttacggtgcgctcc
ggccgtgcagacaaggctctgctgtgcaaggtggtaaaactgggcaagaattttgccttt
gtcatgctggaggacggcaccagcgatatctttatcccgggccgttttacccgcggtgcc
atgcccggcgacatggtgcttgtagaaaagtttgagcacccccgtgtggagggcagcgat
gaaggcgagatcctggccattctggaagaaaagaacgatctggtgggcactgcccgccgc
attgatggccgcctgaagttcgtgccggacgactgcccggccatctccatgcagatgatg
cgtgattgcgagggcggtgcaaaggacggcgacaaggtggccgtggagatcctgcagcgc
ggcaatcggcaggaagatcaccgcgtgggcgttgccatgcggtttggcagctcggacgaa
gcaaagcgctgcgcaaaggccctgctctatgcgcaggatatccacagccgcttcccggat
aaggttcgtgaggaagccaagaagctggagaacgctgaggtctctgaaaaggacaccgag
ggccgcatggatctgcgcgccctgcccatcttcaccattgacagtgctgagaccaaggac
atcgatgatgccatcagcctgaccaagaccccggagggcggttttgagctgggtgtccac
attgcagatgtttccaactatgtcaagcccggcagcgaactggacaacgaagcgtttaac
cgcgcaaccagcgtctactatgccgatcaggtggtgcccatgctgcccaagcagctttcc
aacggcatctgcagcctgaatgagggcgtgctgcgtctggccttctcctgcctgatgcat
ctggataaggatggcaacctgatcgattaccgctttgtcaagtcggtcatccgcagccgc
gtcaagggtgtttactccgagatcaacgccttgctggccggcagtgctgacgacgagctg
aagggcaagtaccatgaagtgctcagccagctgcccgccatgaaggagctgtacggccac
cgtgcccgcctgcgcaaggagcgcggctgcatggatatcgagagcggcgaggtgaagctg
atcctcgacgaggacggccactgcatcgatgtgaaaaagcgcacctccggcgagagcgaa
gctatgatcgaagagttcatgctgctggccaaccagtgcgctgcccactttgcccgcgtg
aagcagatccccttcgtgtaccgtgtgcacgaggaacccaatgctgaaaagctggagcgt
ctgcacactctgctgcaggcctgcggcatcaacgatcactttgccaaggatgtgcccacc
cccaaggagctgagcgcaattctggaaggtgtgcgcggcggcccgtatgagcagatcatc
aataccggtatgctgcgctgcatgtccaaggctgtgtatgaggaaaagcccaagggccac
tacggcctggtgctgaaggactacgctcacttcaccagccccatccgccgctacccggat
ctggccatccatcgcatcatgaccgcccagctcaagggcatggataaggataccatggtg
ctgcgctacagcgactttgccgagaaggcaagcaagcagtccagtgagcgcgagatcatt
gcaatgcagatcgagcgcaaggctgaggactgctacaaggccgagtatgcccgccgccat
ctgggcgagtgctacgagggccgcatttccggcgtgacccagcgcggcctgttcattgag
ctggacaacggcgtggagggctttgtgccggcttccagcctgaccccctccggtaccatg
ctcaccgagggcatccgcctgtccgaccccgtctccggcaagaactggagcctgggcgac
accatgatgatcaccattgtgcgtgcggatgtgaacctgggcaagatcgactttgaggtt
gctccggcaagcacaaagtaa
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